BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G12505.1

Length=1035
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497486 jgi|Araly1|497486|fgenesh2_kg.616__1__AT2G12505.1          309    3e-83
  Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1          100    2e-20


> Ahg497486 jgi|Araly1|497486|fgenesh2_kg.616__1__AT2G12505.1
Length=849

 Score =  309 bits (167),  Expect = 3e-83
 Identities = 210/230 (91%), Gaps = 6/230 (3%)
 Strand=Plus/Plus

Query  16   TCTTGGCTTATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTCCATGGTGGACG  75
            |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    TCTTGGCTCATTGGTCCATCCGTCCTCCAAACGTACGCCCCTTCGGTTTCATGGTGGACG  60

Query  76   ATTGAA-CCCTTGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTA-C--TACGA  131
            ||  || |||| ||||||||||||||||||||||||||||||||||||||| |  |||||
Sbjct  61   ATC-AAGCCCTCGGCTTATCGAACCATCCATGTTTCCGATCCGGTCGTTTATCACTACGA  119

Query  132  CCGCCCACGGTTTACTAACCGTTTATCCGTCCGGTCTATGGTGGTCGATAAAGCTTTCGG  191
            ||||||||||| ||||||||||||| |||| ||||| ||||||||| |||| || |||||
Sbjct  120  CCGCCCACGGTCTACTAACCGTTTACCCGTACGGTCCATGGTGGTC-ATAACGCCTTCGG  178

Query  192  CTTATCGATCCATCCATACGATCCGAACTATATCCTTATCACACCCAAGG  241
            |||| |||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct  179  CTTACCGATCCATCCATGCGATCCGAACAATATCATTATCACACCCAAGG  228


 Score = 99.0 bits (53),  Expect = 6e-20
 Identities = 91/107 (85%), Gaps = 11/107 (10%)
 Strand=Plus/Plus

Query  702  ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACAACTTCAGGATGTGGGGCGAATGGAT  761
            ||||||||||||||||||||||||||||||||||| |||| ||  | |   ||||||| |
Sbjct  653  ATACTCGCCGAGCCGCACCCCCTTTCCGACCAACA-CTTC-GG--G-G---CGAATGGGT  704

Query  762  GC-TTCCCGAA-GCATCACATCCGTTCCTTGCACCCTTTCGAAAGGT  806
            |  || ||||| | ||||||||||||| |||||||||| ||||||||
Sbjct  705  GTGTTTCCGAAAG-ATCACATCCGTTCGTTGCACCCTTCCGAAAGGT  750


> Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1
Length=459

 Score =  100 bits (54),  Expect = 2e-20
 Identities = 63/67 (94%), Gaps = 2/67 (3%)
 Strand=Plus/Minus

Query  902  CTTTTGGCCGAGACACCTTTTCA-CCCGTGAGCTACCACAGTCCACCAGCTCGAGTGTCA  960
            |||||||||||||||||| |||| |||  |||||||||||||||||||||||||||||||
Sbjct  66   CTTTTGGCCGAGACACCTCTTCATCCC-CGAGCTACCACAGTCCACCAGCTCGAGTGTCA  8

Query  961  GCTGACC  967
            |||||||
Sbjct  7    GCTGACC  1


 Score = 82.4 bits (44),  Expect = 6e-15
 Identities = 57/63 (90%), Gaps = 1/63 (2%)
 Strand=Plus/Minus

Query  365  ATTACATCCATGGGCGACCCTTGGGTGTGTTTGGATGCACTTATCTTTGTGCTTCC-TCG  423
            ||| |||||||||||||||||||||||||||||| |||||||||| | ||| |||| |||
Sbjct  288  ATTGCATCCATGGGCGACCCTTGGGTGTGTTTGGTTGCACTTATCCTCGTGATTCCATCG  229

Query  424  AAC  426
            |||
Sbjct  228  AAC  226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38504146170


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5