BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12550.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931053 jgi|Araly1|931053|scaffold_303510.1 2226 0.0
> Ahg931053 jgi|Araly1|931053|scaffold_303510.1
Length=1757
Score = 2226 bits (1205), Expect = 0.0
Identities = 1382/1466 (94%), Gaps = 18/1466 (1%)
Strand=Plus/Plus
Query 9 CATCAATGGCGAAACTAAAGGTTGCTGGTACATGGGGAGGCATACTTGAGGTAGAACTCG 68
|||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 20 CATCAATGGCGAAACTCAAGGTTGCTGGTACATGGGGAGGTATAATTGAAGTAGAACTCG 79
Query 69 AGAATTGGACTCTAAACATGTTGAGAGACGAAGTAGCTAAGCGATCAGGACTTGATCCTG 128
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 80 AGAATTGGACTCTACACATGTTGAGAGACGAAGTCGCTAAGCGATCAGGACTTGATCCTG 139
Query 129 AATCAATCAAACTAATTTTCGCCGGAAAAATCCTGAAAGACGACGGCGATGCTACTCTAA 188
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 140 AATCAATCAAACTAATTTTCGCCGGAAAAATCCTCAGAGACGACGGCGATGCTACTCTAA 199
Query 189 CGCTTTCGCAATTGGGTATTAAAGAAAACTCTAAGATCCTCTCTTGTCGT-CAAGCTGCT 247
| ||| ||||||| ||||||||||||||||| |||||||||||| ||||| | |||||
Sbjct 200 CACTTGCGCAATTAGGTATTAAAGAAAACTCCAAGATCCTCTCTAGTCGTGGTA-CTGCT 258
Query 248 CCTGAAGAAGGTAAGTCTATCATGGCTGAAGAAGAAAGGGCTCGTCGTCTCTCTCGTGTC 307
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 259 CCCGAAGAAGGCAAGTCTATCATGGCTGAAGAAGAAAGGTCTCGTCGTCTCTCTCGTGTC 318
Query 308 AAAGCTGCAGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCATTACCGATCCAAGAC 367
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 319 AAAGCTGCTGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCGTTGCCGATCCAAGAC 378
Query 368 TATAACATAGAGCTGGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGAT 427
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TATAACATAGAGCTTGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGAT 438
Query 428 CAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTTTAATAGAAATT 487
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 439 CAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTCTAATCGAAATG 498
Query 488 GAAATGTATTCCGATGCAGTTGAAGTTCTTGCTATGGCAGAGGAATCATTTTTGCTCTGT 547
||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 499 GAAATGTATTCTGATGCTGTTGAAGTGCTTGCTATGGCAGAGGAATCATTCTTGCTCTGT 558
Query 548 GATCCCAAGATTCTCGAGCTTGTTGACAACCTCCCTATGATGGAAATAGACATTGTCTGG 607
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 559 GATCCCAAGATTCTTGAGCTTGTTGACAACCGCCCTATGATGGAAATAGACATTGTCTGG 618
Query 608 TGTTATTTCTTGCTCCGGGACATCAAATGCCTTTCAGATGCTGGTGTTCGCCTTGTGAGA 667
|| |||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 619 TGCTATTTCTTGCTCCGAGACGTCAAATGCCTTTCAGATGCTGGCGTTCGCCTTGAGAGA 678
Query 668 GCAAGGAAAGGACTCGAGCGTGCTCATGGGAAGGATCTTTCTCGTGTGAGGCTCCTTCAA 727
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 679 GCAAGGAAGGGACTCGAGCGTGCTCATGGGAAGGATCTCTCTCGTGTGAGACTCCTTCAA 738
Query 728 GCAGGTCAAAGTCCAGAGATGGCTA-TATATTTGAGGCTAGAGTTACTAGAAGGTGTGGT 786
||||| ||||||||||||||||| | |||||||||| |||||||| ||||||||||| ||
Sbjct 739 GCAGGGCAAAGTCCAGAGATGGC-ACTATATTTGAGACTAGAGTTGCTAGAAGGTGTTGT 797
Query 787 GGCATATCACACTGGTCAGAATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAA 846
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GGCATATCACACTGGTCAGTATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAA 857
Query 847 ATTCTTGCAGCTACAAATACCCGATGAAACGCTGTCGCTAGTTATGGGTATGGGCTTTCA 906
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 858 ATTCTTGCAGCTACAAATACCCGATGAAACACTGTCGCTTGTTATGGGTATGGGCTTCCA 917
Query 907 AGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGA 977
Query 967 TTTTCTTATCGAAGAGCGGGCGAAAAA-AGCCCAAAAGCGGGAGCAGGATCTTCAGAGAC 1025
|||||||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||
Sbjct 978 TTTTCTTATCGAAGAGAGGGC-AAAAAGAGCCCAAAAGCGGGAACAGGATCTCCAGAGAC 1036
Query 1026 AA-AGCGAAATACTTGAGCAGAAAAAGTATGGAGTAACACCCATGAAGAAAGCTGTTGAT 1084
|| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1037 AACAA-GAAATACTTGAGCAGAAAAAGTATGGAGTGACACCCATGAAGAAAGCTGTTGAT 1095
Query 1085 ATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGAACTTGCTGCTGAATCC 1144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1096 ATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGATCTTGCTGCTGAATCC 1155
Query 1145 CTCCGGAGAAATGAGAACGATATTCAGAAGGCGCTTGATATACTCACAGACCCAAAAGTT 1204
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1156 CTCCGGAGAAATGAGAACGATATTCAGAAGGCCCTTGATATACTCACAGACCCAAAAGTT 1215
Query 1205 AATTCAACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGGCAAGAACAACTGGTA 1264
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1216 AATTCGACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGACAAGAACAACTAGTA 1275
Query 1265 GGCATATCAGTTGCTGAACTTGTGTCTATGGGCTTTGAACGAGGAAAAGCTACCTCTGCT 1324
||||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 1276 GGCATATCAGTTGATGAACTTGTGTCTATGGGATTTGAACGAGGAAGAGCAACCTCTGCT 1335
Query 1325 TTGGAAGCTGGTGGCAGCCGAGAAGATACAATCCAAAGGCTACTATCTGCATCAGTAGCA 1384
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1336 TTGGAAGCTGGTGGCAACCGAGAAGATATAATCCAAAGGCTACTATCTGCATCAGAAGCA 1395
Query 1385 AATCCA-GGAACTACTACTACCT-CTGTTATAAATGCAACAAGTAGCACAAACAATGTGG 1442
|| ||| |||||||| || | | |||| | || ||||||||||||||||||||||| ||
Sbjct 1396 AA-CCAAGGAACTAC--CT-C-TGCTGT-A-AA-TGCAACAAGTAGCACAAACAATGGGG 1447
Query 1443 GTGCGGAGAGCAGTGGTTTTGGCGGT 1468
|||||||||||||||||||||| |||
Sbjct 1448 GTGCGGAGAGCAGTGGTTTTGGGGGT 1473
Score = 375 bits (203), Expect = 5e-103
Identities = 240/258 (93%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 1466 GGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGA 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGA 1560
Query 1526 GCAA-GCACATCCAGTGACGGCATGGAAGAAGAGCGGGACTCTGAGATAGAAGATGAAAT 1584
| || | ||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1561 G-AAGGTACATCCAGTGATGTTGGGGAAGAAGAACGGGACTCTGAGATAGAAGATGAAAT 1619
Query 1585 AGCAGACGAGATTGCAAGGGTCGATGCTTTGTCGGCTTATGATATCAATCTTGACAAGGA 1644
||| || |||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1620 AGCTGATGAGATTGCAAAGGTTGATGCTTTGTCGGCTTATGACATCAATCTTGACAAGGA 1679
Query 1645 AATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTTGTTGAAG 1704
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1680 AATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTGGTTGAAG 1739
Query 1705 AGCGGGTCGTTCTGGAGA 1722
||||| | || |||||||
Sbjct 1740 AGCGGATTGTACTGGAGA 1757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5