BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G12550.1 Length=1963 Score E Sequences producing significant alignments: (Bits) Value Ahg931053 jgi|Araly1|931053|scaffold_303510.1 2226 0.0 > Ahg931053 jgi|Araly1|931053|scaffold_303510.1 Length=1757 Score = 2226 bits (1205), Expect = 0.0 Identities = 1382/1466 (94%), Gaps = 18/1466 (1%) Strand=Plus/Plus Query 9 CATCAATGGCGAAACTAAAGGTTGCTGGTACATGGGGAGGCATACTTGAGGTAGAACTCG 68 |||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||| Sbjct 20 CATCAATGGCGAAACTCAAGGTTGCTGGTACATGGGGAGGTATAATTGAAGTAGAACTCG 79 Query 69 AGAATTGGACTCTAAACATGTTGAGAGACGAAGTAGCTAAGCGATCAGGACTTGATCCTG 128 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 80 AGAATTGGACTCTACACATGTTGAGAGACGAAGTCGCTAAGCGATCAGGACTTGATCCTG 139 Query 129 AATCAATCAAACTAATTTTCGCCGGAAAAATCCTGAAAGACGACGGCGATGCTACTCTAA 188 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 140 AATCAATCAAACTAATTTTCGCCGGAAAAATCCTCAGAGACGACGGCGATGCTACTCTAA 199 Query 189 CGCTTTCGCAATTGGGTATTAAAGAAAACTCTAAGATCCTCTCTTGTCGT-CAAGCTGCT 247 | ||| ||||||| ||||||||||||||||| |||||||||||| ||||| | ||||| Sbjct 200 CACTTGCGCAATTAGGTATTAAAGAAAACTCCAAGATCCTCTCTAGTCGTGGTA-CTGCT 258 Query 248 CCTGAAGAAGGTAAGTCTATCATGGCTGAAGAAGAAAGGGCTCGTCGTCTCTCTCGTGTC 307 || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 259 CCCGAAGAAGGCAAGTCTATCATGGCTGAAGAAGAAAGGTCTCGTCGTCTCTCTCGTGTC 318 Query 308 AAAGCTGCAGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCATTACCGATCCAAGAC 367 |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 319 AAAGCTGCTGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCGTTGCCGATCCAAGAC 378 Query 368 TATAACATAGAGCTGGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGAT 427 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 TATAACATAGAGCTTGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGAT 438 Query 428 CAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTTTAATAGAAATT 487 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 439 CAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTCTAATCGAAATG 498 Query 488 GAAATGTATTCCGATGCAGTTGAAGTTCTTGCTATGGCAGAGGAATCATTTTTGCTCTGT 547 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| Sbjct 499 GAAATGTATTCTGATGCTGTTGAAGTGCTTGCTATGGCAGAGGAATCATTCTTGCTCTGT 558 Query 548 GATCCCAAGATTCTCGAGCTTGTTGACAACCTCCCTATGATGGAAATAGACATTGTCTGG 607 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 559 GATCCCAAGATTCTTGAGCTTGTTGACAACCGCCCTATGATGGAAATAGACATTGTCTGG 618 Query 608 TGTTATTTCTTGCTCCGGGACATCAAATGCCTTTCAGATGCTGGTGTTCGCCTTGTGAGA 667 || |||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||| Sbjct 619 TGCTATTTCTTGCTCCGAGACGTCAAATGCCTTTCAGATGCTGGCGTTCGCCTTGAGAGA 678 Query 668 GCAAGGAAAGGACTCGAGCGTGCTCATGGGAAGGATCTTTCTCGTGTGAGGCTCCTTCAA 727 |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 679 GCAAGGAAGGGACTCGAGCGTGCTCATGGGAAGGATCTCTCTCGTGTGAGACTCCTTCAA 738 Query 728 GCAGGTCAAAGTCCAGAGATGGCTA-TATATTTGAGGCTAGAGTTACTAGAAGGTGTGGT 786 ||||| ||||||||||||||||| | |||||||||| |||||||| ||||||||||| || Sbjct 739 GCAGGGCAAAGTCCAGAGATGGC-ACTATATTTGAGACTAGAGTTGCTAGAAGGTGTTGT 797 Query 787 GGCATATCACACTGGTCAGAATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAA 846 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 798 GGCATATCACACTGGTCAGTATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAA 857 Query 847 ATTCTTGCAGCTACAAATACCCGATGAAACGCTGTCGCTAGTTATGGGTATGGGCTTTCA 906 |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || Sbjct 858 ATTCTTGCAGCTACAAATACCCGATGAAACACTGTCGCTTGTTATGGGTATGGGCTTCCA 917 Query 907 AGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGA 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 AGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGA 977 Query 967 TTTTCTTATCGAAGAGCGGGCGAAAAA-AGCCCAAAAGCGGGAGCAGGATCTTCAGAGAC 1025 |||||||||||||||| |||| ||||| ||||||||||||||| |||||||| ||||||| Sbjct 978 TTTTCTTATCGAAGAGAGGGC-AAAAAGAGCCCAAAAGCGGGAACAGGATCTCCAGAGAC 1036 Query 1026 AA-AGCGAAATACTTGAGCAGAAAAAGTATGGAGTAACACCCATGAAGAAAGCTGTTGAT 1084 || | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1037 AACAA-GAAATACTTGAGCAGAAAAAGTATGGAGTGACACCCATGAAGAAAGCTGTTGAT 1095 Query 1085 ATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGAACTTGCTGCTGAATCC 1144 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1096 ATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGATCTTGCTGCTGAATCC 1155 Query 1145 CTCCGGAGAAATGAGAACGATATTCAGAAGGCGCTTGATATACTCACAGACCCAAAAGTT 1204 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1156 CTCCGGAGAAATGAGAACGATATTCAGAAGGCCCTTGATATACTCACAGACCCAAAAGTT 1215 Query 1205 AATTCAACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGGCAAGAACAACTGGTA 1264 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1216 AATTCGACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGACAAGAACAACTAGTA 1275 Query 1265 GGCATATCAGTTGCTGAACTTGTGTCTATGGGCTTTGAACGAGGAAAAGCTACCTCTGCT 1324 ||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||| Sbjct 1276 GGCATATCAGTTGATGAACTTGTGTCTATGGGATTTGAACGAGGAAGAGCAACCTCTGCT 1335 Query 1325 TTGGAAGCTGGTGGCAGCCGAGAAGATACAATCCAAAGGCTACTATCTGCATCAGTAGCA 1384 |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1336 TTGGAAGCTGGTGGCAACCGAGAAGATATAATCCAAAGGCTACTATCTGCATCAGAAGCA 1395 Query 1385 AATCCA-GGAACTACTACTACCT-CTGTTATAAATGCAACAAGTAGCACAAACAATGTGG 1442 || ||| |||||||| || | | |||| | || ||||||||||||||||||||||| || Sbjct 1396 AA-CCAAGGAACTAC--CT-C-TGCTGT-A-AA-TGCAACAAGTAGCACAAACAATGGGG 1447 Query 1443 GTGCGGAGAGCAGTGGTTTTGGCGGT 1468 |||||||||||||||||||||| ||| Sbjct 1448 GTGCGGAGAGCAGTGGTTTTGGGGGT 1473 Score = 375 bits (203), Expect = 5e-103 Identities = 240/258 (93%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 1466 GGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGA 1525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 GGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGA 1560 Query 1526 GCAA-GCACATCCAGTGACGGCATGGAAGAAGAGCGGGACTCTGAGATAGAAGATGAAAT 1584 | || | ||||||||||| | ||||||||| |||||||||||||||||||||||||| Sbjct 1561 G-AAGGTACATCCAGTGATGTTGGGGAAGAAGAACGGGACTCTGAGATAGAAGATGAAAT 1619 Query 1585 AGCAGACGAGATTGCAAGGGTCGATGCTTTGTCGGCTTATGATATCAATCTTGACAAGGA 1644 ||| || |||||||||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1620 AGCTGATGAGATTGCAAAGGTTGATGCTTTGTCGGCTTATGACATCAATCTTGACAAGGA 1679 Query 1645 AATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTTGTTGAAG 1704 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1680 AATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTGGTTGAAG 1739 Query 1705 AGCGGGTCGTTCTGGAGA 1722 ||||| | || ||||||| Sbjct 1740 AGCGGATTGTACTGGAGA 1757 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73780804565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5