BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12646.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480295 jgi|Araly1|480295|fgenesh2_kg.3__2996__AT2G12646.1 1683 0.0
Ahg931063 jgi|Araly1|931063|scaffold_303520.1 1290 0.0
> Ahg480295 jgi|Araly1|480295|fgenesh2_kg.3__2996__AT2G12646.1
Length=1064
Score = 1683 bits (911), Expect = 0.0
Identities = 1015/1066 (95%), Gaps = 3/1066 (0%)
Strand=Plus/Plus
Query 6 tttttttttCTCTCTTTCTCTCTCCCTTGTGATCCTCCATAAATCCTATCATCAAGTACT 65
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TTTTTTTCTCTCTCTCTCTCTCTCCCTTGTGATCCTCCATAAATCCTATCATC-AGTACT 59
Query 66 CCCCTAAAGAATCCTTTTTCTCTTCCTAATATTACTCTTTGTAGTGAGTAGTGGCCAAAA 125
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 CCCCTAAAAAATCCCTTTTCTCTTCCGAATATTACTCTTTGTAGTGAGTAGTGGCCAAAA 119
Query 126 GTTTCCATCTCCCAAAGCTGACTTTCAGTTGAGTCCTCATGGGAATTCAGAAACCGGCAT 185
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 120 ATTTCCATCTCCCAAAGCTTACTTTGAGTTGTGTCCTCATGGGAATTCAGAAACCGGCAT 179
Query 186 GGTTGGATGCGCTATACGCAGAGAAGTTCTTCGTGGGATGTCCATACCATGAGACGGCGA 245
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 180 GGTTGGATGCGCTATACGCAGAGAAGTTCTTCGTAGGATGTCCTTACCATGAGACAGCAA 239
Query 246 AGAAGAACGAGAGGAACGTGTGTTGTCTTGATTGTTGCACCAGTCTCTGCCCTCACTGTG 305
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 AGAAGAACGAGAGGAACGTGTGTTGTCTTGATTGTTGCACCAGTCTCTGTCCTCACTGTG 299
Query 306 TACCCTCTCATAGATTCCATAGACTCCTTCAAGTTCGCCGTTATGTGTATCACGACGTTG 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TACCCTCTCATAGATTTCATAGACTCCTTCAAGTTCGCCGTTATGTGTATCACGATGTTG 359
Query 366 TTCGGCTTGAAGATCTTCAGAAACTCATCGACTGCTCTAACGTTCAAGCTTATACAATAA 425
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 360 TTCGGCTTGAAGATCTTCAAAAACTAATCGACTGCTCTAACGTTCAAGCTTATACTATAA 419
Query 426 ATAGTGCAAAAGTGGTGTTCATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATAGTGCAAAAGTGGTGTTCATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTG 479
Query 486 GCAACTATTGCACTTCTTGTGACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGG 545
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCAACTATTGCACATCATGTGACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGG 539
Query 546 GTTGTAAGGTGGACTTTGTGATGAAACGTTACAGGGACATAACCCCATTCCTCAAGCCAT 605
||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 540 GTTGTAAGGTGGACTTTGTGATGAAACGTTATAGGGACTTAACCCCATTCCTAAAGCCAT 599
Query 606 GCCACACTCTAACCCTAGGTCCTGACTACATCATCCCACAAGACTTACTGACAGATGATG 665
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GTCACACTCTAACCCTAGGTCCTGACTACATCATCCCACAAGACTTACTGACGGATGATG 659
Query 666 AAGTGGCGGCCTACGAGACTCCTCGATCAACTGTGGTAGACGGCGATGAGTCCATGAGCT 725
| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 660 ATGTGGCGGTCTACGAGACTCCTAGATCAACTGTGGTAGACGGGGATGAGTCCATGAGCT 719
Query 726 GGTCCTCAGCTTCCTCGGATAACAACAATGCGGGTGCGGCGGCTGCTTATGCCGCAACCA 785
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 720 GGTCCTCCGCTTCCTCGGATAACAACAATACGGGTGCGGCTGCTGCTTATGCCGCGACCA 779
Query 786 CCACCCATGTCGTGAGGaaaaaaaGGACTGGTTTTTGCCTTTGCGCTAAATCGGCTAATA 845
| |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 780 CAACCCATGTCGTGAGGAAAAAGCGGACCGGTTTTTGCCTTTGCGCCAAATCGGCTAATA 839
Query 846 GTTATAAAGAAGTTTCGGAGGATCCTGACGATATTTCTGCTTGCATCAATCGGCGAAAAG 905
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 840 GTTATAAAGAAGTTTCGGAGGATCCTGACGATATTTCTACTTGCATTAATCGGCGAAAAG 899
Query 906 GCGTTCCTCAACGATCTCCTCTCTGTTAACGTACtcttttcttctttgtttttgttttct 965
||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |
Sbjct 900 GCGTTCCTCAACGATCTCCTCTCTGTTAACGTACTTTTTTATTTTTTGTTTTTGTTTTTT 959
Query 966 aatcttctttattagtttctttt-cACCATATAGTCTTATATGTTACATGTATGGATTCT 1024
||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 AATCTTCTTAATTAGTTT-TTTTGCACCATATAGTCTTATATGTTACATGTATGGATTCT 1018
Query 1025 TGTCGTGCGGTCTCTCTAATAAAGTTTATAATCAGTTTTTTATTTT 1070
||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1019 TGTCGTGCGGTCTCTCTAATAAAGTTTATAATCTGTTTTTTTTTTT 1064
> Ahg931063 jgi|Araly1|931063|scaffold_303520.1
Length=811
Score = 1290 bits (698), Expect = 0.0
Identities = 772/809 (95%), Gaps = 0/809 (0%)
Strand=Plus/Plus
Query 146 ACTTTCAGTTGAGTCCTCATGGGAATTCAGAAACCGGCATGGTTGGATGCGCTATACGCA 205
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 ACTTTGAGTTGTGTCCTCATGGGAATTCAGAAACCAGCATGGTTGGATGCGCTATACGCA 62
Query 206 GAGAAGTTCTTCGTGGGATGTCCATACCATGAGACGGCGAAGAAGAACGAGAGGAACGTG 265
|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 63 GAGAAGTTCTTCGTAGGATGTCCTTACCATGAGACAGCAAAGAAGAACGAGAGGAACGTG 122
Query 266 TGTTGTCTTGATTGTTGCACCAGTCTCTGCCCTCACTGTGTACCCTCTCATAGATTCCAT 325
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 123 TGTTGTCTTGATTGTTGCACCAGTCTCTGTCCTCACTGTGTACCCTCTCATAGATTTCAT 182
Query 326 AGACTCCTTCAAGTTCGCCGTTATGTGTATCACGACGTTGTTCGGCTTGAAGATCTTCAG 385
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 183 AGACTCCTTCAAGTTCGCCGTTATGTGTATCACGATGTTGTTCGGCTTGAAGATCTTCAA 242
Query 386 AAACTCATCGACTGCTCTAACGTTCAAGCTTATACAATAAATAGTGCAAAAGTGGTGTTC 445
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 243 AAACTAATCGACTGCTCTAACGTTCAAGCTTATACTATAAATAGTGCAAAAGTGGTGTTC 302
Query 446 ATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTGGCAACTATTGCACTTCTTGT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 303 ATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTGGCAACTATTGCACATCATGT 362
Query 506 GACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGGGTTGTAAGGTGGACTTTGTG 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGGGTTGTAAGGTGGACTTTGTG 422
Query 566 ATGAAACGTTACAGGGACATAACCCCATTCCTCAAGCCATGCCACACTCTAACCCTAGGT 625
||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 423 ATGAAACGTTATAGGGACTTAACCCCATTCCTAAAGCCATGTCACACTCTAACCCTAGGT 482
Query 626 CCTGACTACATCATCCCACAAGACTTACTGACAGATGATGAAGTGGCGGCCTACGAGACT 685
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 483 CCTGACTACATCATCCCACAAGACTTACTGACGGATGATGATGTGGCGGTCTACGAGACT 542
Query 686 CCTCGATCAACTGTGGTAGACGGCGATGAGTCCATGAGCTGGTCCTCAGCTTCCTCGGAT 745
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 543 CCTAGATCAACTGTGGTAGACGGGGATGAGTCCATGAGCTGGTCCTCCGCTTCCTCGGAT 602
Query 746 AACAACAATGCGGGTGCGGCGGCTGCTTATGCCGCAACCACCACCCATGTCGTGAGGaaa 805
||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 603 AACAACAATACGGGTGCGGCTGCTGCTTATGCCGCGACCACAACCCATGTCGTGAGGAAA 662
Query 806 aaaaGGACTGGTTTTTGCCTTTGCGCTAAATCGGCTAATAGTTATAAAGAAGTTTCGGAG 865
|| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 663 AAGCGGACCGGTTTTTGCCTTTGCGCCAAATCGGCTAATAGTTATAAAGAAGTTTCGGAG 722
Query 866 GATCCTGACGATATTTCTGCTTGCATCAATCGGCGAAAAGGCGTTCCTCAACGATCTCCT 925
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 723 GATCCTGACGATATTTCTACTTGCATTAATCGGCGAAAAGGCGTTCCTCAACGATCTCCT 782
Query 926 CTCTGTTAACGTACtcttttcttctttgt 954
|||||||||||||||||||| || |||||
Sbjct 783 CTCTGTTAACGTACTCTTTTATTTTTTGT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5