BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12875.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346725 jgi|Araly1|346725|fgenesh1_pg.C_scaffold_5000117 169 4e-41
> Ahg346725 jgi|Araly1|346725|fgenesh1_pg.C_scaffold_5000117
Length=468
Score = 169 bits (91), Expect = 4e-41
Identities = 200/248 (81%), Gaps = 26/248 (10%)
Strand=Plus/Plus
Query 473 CGGAGGAGCCATCCTCGACGGAGGAGCCAT-CATCATCAGAGCAAAATAAGGCAATTGAG 531
||||| ||||||||||||||| | | |||| | | | |||||||||||||||||||||||
Sbjct 119 CGGAGCAGCCATCCTCGACGGCGCAACCATCCCTGA-CAGAGCAAAATAAGGCAATTGAG 177
Query 532 GGAGGAGGAACTGAAGAAC--CAA-TCCTGG---CCTTAACTCCGGTTTTAGAGGCAGTg 585
||||||||| |||||||| ||| |||||| |||||| |||||||||||| | |||
Sbjct 178 GGAGGAGGAGTTGAAGAACAACAAGTCCTGGGGACCTTAAGTCCGGTTTTAGAAG-AGTC 236
Query 586 gaagaagagaagtcttacaagaatgaggaagaaaagtctgagaaggatgaggaagaaaag 645
| || | | | |||||| |||||||| ||||||||| ||||||||||| ||
Sbjct 237 -A-GA--------C--A-A-GAATGAAGAAGAAAATTCTGAGAAGAATGAGGAAGAAGAG 282
Query 646 agtgaagaagaagagagcgaagaagaagagaaagaagaagaagagaaagaagaagaaaaa 705
|||| ||||||||||||||||||||||| ||||||||||| || || ||||||| ||
Sbjct 283 AGTGGCGAAGAAGAGAGCGAAGAAGAAGACAAAGAAGAAGA-GA-AA-GAAGAAGGGAAT 339
Query 706 gaagaagG 713
|| |||||
Sbjct 340 GAGGAAGG 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5