BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G12905.1

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475597 jgi|Araly1|475597|fgenesh2_kg.2__727__AT2G12905.1          366    3e-101


> Ahg475597 jgi|Araly1|475597|fgenesh2_kg.2__727__AT2G12905.1
Length=219

 Score =  366 bits (198),  Expect = 3e-101
 Identities = 212/219 (97%), Gaps = 0/219 (0%)
 Strand=Plus/Minus

Query  1    ATGGTTCCGGTATTACAGATCAATCTTACTACACTAATACAATATACAAATAGGAGGCAT  60
            |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  219  ATGGTTCCCGTATTACAGATCAATCCTACTACACTAATACAATATACGAATAGGAGGCAT  160

Query  61   AGGGGAAGAAGCACTACGCCGAGAAATCAACAACACAAAAACTTTCTTAAAAATGATTCC  120
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  159  AGGGGAAGAAGCACTACGCCGAGAAATCAACAACACAAAAACTTTCTTCAAAATGATTCC  100

Query  121  CTTTCTTTCTTCTTCTTTGTTGGGATTGGGACTAATCAAAATGGTTGGAACAATAAACAT  180
            ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct  99   CTTTCTTTCTTCTTCTTCGTTGGGATTGGGACTAATTAACATGGTTGGAACAATAAACAT  40

Query  181  CCATCTCGTTCGTACTTTGGATACCCGTATAACCATTGA  219
            |||||||||||||||||||||||||||||||||||||||
Sbjct  39   CCATCTCGTTCGTACTTTGGATACCCGTATAACCATTGA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7484899156


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5