BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12940.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342995 jgi|Araly1|342995|fgenesh1_pg.C_scaffold_3002758 665 0.0
Ahg931073 jgi|Araly1|931073|scaffold_303530.1 586 1e-166
> Ahg342995 jgi|Araly1|342995|fgenesh1_pg.C_scaffold_3002758
Length=975
Score = 665 bits (360), Expect = 0.0
Identities = 621/742 (84%), Gaps = 38/742 (5%)
Strand=Plus/Plus
Query 93 TCACTTGCCTTCTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATCCCGTCGCAAT 152
|||| || || |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 82 TCACATGACTACTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATTCCGTCGTAAT 141
Query 153 TCATTACCATTGATGAATCC---GT-CAACTTCT-A--TGGAGAGTAGAGACTCTTCCAT 205
|||||||||| |||| | || | | ||||| | |||| | |||||||||||||||
Sbjct 142 TCATTACCATCGATG-AGCCTTTCTCCGTCTTCTCATGTGGAAAATAGAGACTCTTCCAT 200
Query 206 GA-GG-T-TTAAGAAAAACTC-TTTATTGCCTCCTTTGGGTGTGAAGAAAATAGCACCCA 261
| || | |||||||||| | || |||||||||||||||||| |||| || |||| |||
Sbjct 201 TAGGGCTAATAAGAAAAAC-CATTCATTGCCTCCTTTGGGTGTAAAGAGAAGAGCAGCCA 259
Query 262 AAGATATTGGACCCCTAAAGAGACACTACAGGAGTGTTTCAATGGATAGTTGTTTGAGTG 321
|||| |||| ||| ||| ||||||| |||| ||||||||| |||| |||||||| ||||
Sbjct 260 AAGACATTGAACCTTTAAGGAGACACAACAGAAGTGTTTCACTGGACAGTTGTTTCAGTG 319
Query 322 ACTTACTGAAGCTAACTCCTTCTCCGGGTAAC-ACTCCATCTTCAAGATT-GGTTGATGG 379
|||||| |||| | ||||||||||||||||| ||| ||||| || || |||||||||
Sbjct 320 ACTTACCGAAGTTGCCTCCTTCTCCGGGTAACGTTTCC-TCTTCCAG-TTCGGTTGATGG 377
Query 380 AGACCAGAATGCTTCCAG-GCTAGAGTTTGAT-GCCAATGATTATACTGATGATGAATTG 437
|||| ||||||||||| | || ||||||| | | || |||||||||||||||||| |||
Sbjct 378 AGACGAGAATGCTTCC-GACCTCGAGTTTGGTAG-CAGTGATTATACTGATGATGAGTTG 435
Query 438 AATAAGATAGCAAAGAGTAACAAACTTAAAGAGGTTGCAT-TGGATCCTAAGGAAGTCAG 496
|||||||| ||| ||||| || |||||||||| ||| || | ||||||||| |||||||
Sbjct 436 AATAAGATCGCAGAGAGTCCCAGACTTAAAGAGTTTGAATCT-GATCCTAAGAAAGTCAG 494
Query 497 AAGAATCTTGAAGAATCGAGAGTCCGCAGCACATTTAAAGCAGAAGAAGTTACAGTATAT 556
|||||||||||| ||||||||||| || |||| || |||||||| |||||||||||| ||
Sbjct 495 AAGAATCTTGAAAAATCGAGAGTCAGCGGCACGTTCAAAGCAGAGGAAGTTACAGTACAT 554
Query 557 GATTAACTTGGAACACAGAATAAACTTTGTTGAG-AACGAAAATGCTTCAATATTTGAAA 615
||| |||||||| |||| |||||||| ||||| || | |||| ||||||||| |||||
Sbjct 555 TATTGACTTGGAATACAGTGTAAACTTTCTTGAGAAAAG-AAATACTTCAATATATGAAA 613
Query 616 AGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCA-TG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 614 AGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACT- 672
Query 675 ATTCGAATTGAATCGATGGAG-ATACAGGCACAACTTCGGGATGTCTTGACTGAACATTT 733
||||||||||||||||||||| | ||| || |||||||| |||| |||||||||||| ||
Sbjct 673 ATTCGAATTGAATCGATGGAGCA-ACAAGCGCAACTTCGTGATGCCTTGACTGAACAATT 731
Query 734 GCACG-GAGAAAGTGAAAGGCTAAAAGCTGCATTA-A-TTTCGAACGAAAATGGGAATG- 789
||| | | |||| |||||||||| | || | ||| | |||| || ||||| |||||||
Sbjct 732 GCAAGCG-GAAATTGAAAGGCTACATGCGG--TTACAATTTCAAATGAAAAAGGGAATGT 788
Query 790 GAAAAGTCCAAAAGCTAA-GGA 810
| || | |||| ||||| |||
Sbjct 789 GGAA-GCCCAACGGCTAAAGGA 809
> Ahg931073 jgi|Araly1|931073|scaffold_303530.1
Length=741
Score = 586 bits (317), Expect = 1e-166
Identities = 590/718 (82%), Gaps = 34/718 (5%)
Strand=Plus/Plus
Query 20 TCTTCTTCAATCTTTAACAATGAATGGATCCGACAATACCACTCCGTCCCGACCATGGTC 79
|||||||||||| |||||||||||||||||| |||||| |||||| || ||||| |||
Sbjct 4 TCTTCTTCAATCCTTAACAATGAATGGATCCAACAATATCACTCCTTCGGGACCACGGTT 63
Query 80 GATAACTCAGCCTTCACTTGCCTTCTCCTCCTTGCCCCCATTGA---GCCCTTCTCCGTC 136
||| ||||| || || | |||| | | ||||||||||| |||| |||||||| ||||
Sbjct 64 GATGACTCAACCATCGCCTGCC-T-T-GTCCTTGCCCCCGTTGAGCCGCCCTTCTTCGTC 120
Query 137 GTCATCCCGTCGCAATTCATTACCAT---TGA---TGAATCCGTCAACTTC-TATGGAGA 189
|||| |||||||||||||||||||| ||| | ||||||| | || | ||||||
Sbjct 121 ATCATTCCGTCGCAATTCATTACCATCAATGATCCTTTCTCCGTCAGC-TCATGTGGAGA 179
Query 190 GTAGAGACTCTTCCATGAGGTTTAAGAAAAACTCTTTATTGCCTCCTTTGGGTGTGAAGA 249
|||||||||||||||| ||| |||||||||| ||| |||||||||| ||| |||||| |
Sbjct 180 GTAGAGACTCTTCCATTAGGGATAAGAAAAACCCTTCATTGCCTCCTCTGGATGTGAA-A 238
Query 250 A-AATAGCACCCAAAGATATTGGACCCCTAAAGAGACACTACAGGAGTGTTTCAATGGAT 308
| || |||| ||||| |||| ||| ||| ||||||| | ||||||||||||||||||
Sbjct 239 AGAAGAGCAGAGAAAGACATTGAACCTTTAAGGAGACACAATAGGAGTGTTTCAATGGAT 298
Query 309 AGTTGTTTGAGTGACTTACTGAAGCTAACTCCTTCTCCGGGTAAC-ACTCCATCTTCAAG 367
|||| ||| | ||||||||||||| | |||| ||||| ||||||| ||| ||||||||
Sbjct 299 AGTTTTTTCAATGACTTACTGAAGTTGACTCTTTCTCAGGGTAACGTTTCC-TCTTCAAG 357
Query 368 ATTGGTTGATGGAGACCAGAATGCTTCCAGG-CTAGAGTTTGAT-GCCAATGATTATACT 425
||||||||||||||| ||||||||||| || || ||||||| | | || ||||||||||
Sbjct 358 TTTGGTTGATGGAGACAAGAATGCTTCC-GGCCTTGAGTTTGGTAG-CAGTGATTATACT 415
Query 426 GATGATGAATTGAATAAGATAGCAAAGAGTAACAAACTTAAAGAGGTTGCAT-TGGATCC 484
|||||||| ||||||| ||| || |||||| |||||||||| || | |||| | |||||
Sbjct 416 GATGATGAGTTGAATATGATTGCGGAGAGTACCAAACTTAAAAAGATAGCATCT-GATCC 474
Query 485 TAAG-G-AAGTCAGAAGAATCTTGAAGAATCGAG-AGTCCGCAGCACATTT-AAAGCAGA 540
|| | ||||||||||||||||| ||| |||| | || | || ||| ||||||||
Sbjct 475 --AGTGAAAGTCAGAAGAATCTTGGCGAACCGAGTA-TCAATGGTAC-TTTCAAAGCAGA 530
Query 541 AGAAGTTACAGTATATGATTAACTTGGAACACAGAATAAACTTTGTTGAGAACGAAAATG 600
| ||| ||||||| | ||| |||||||||| | |||||| ||| |||||||||||||||
Sbjct 531 GGCAGTCACAGTATGTTATTGACTTGGAACAGAAAATAAAATTTCTTGAGAACGAAAATG 590
Query 601 CTTCAATATTTGAAAAGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGA 660
| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 591 CATCAATGTCTGAAAAGATCACGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGA 650
Query 661 AGAAGGAAATCATGATTCGAATTGAATCGATGGAG-ATACAGGCACAACTTCGGGATG 717
|||||||||||| |||| |||||||||| ||||| | ||| | |||||||| ||||
Sbjct 651 AGAAGGAAATCACGATTAAAATTGAATCGTTGGAGCA-ACAAGTGCAACTTCGTGATG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5