BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13100.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480298 jgi|Araly1|480298|fgenesh2_kg.3__2999__AT2G13100.1 2025 0.0
> Ahg480298 jgi|Araly1|480298|fgenesh2_kg.3__2999__AT2G13100.1
Length=1298
Score = 2025 bits (1096), Expect = 0.0
Identities = 1233/1299 (95%), Gaps = 10/1299 (1%)
Strand=Plus/Plus
Query 355 ATGGGTAGTGGGATTCTTACTCTTGTGTTTGGTTTAGGGTATTGGATGAATGTTCATACA 414
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGGTAGTGGGATTCTTACTGTTGTGTTTGGTTTAGGGTATTGGATGAATGTTCATTTA 60
Query 415 CTTGGGTTTTATATGAGTGTTCAGATTGTTTGTGGTTTGTTTCAATCTATTGGATGGCCT 474
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTTGGGTTTTATATGAGTGTTCAGATTGTGTGTGGTTTGTTTCAATCTATTGGATGGCCT 120
Query 475 TGTGTTGTTTCTGTTGTTGGTAATTGGTGTGGGAAAGAGAAACGTGGTTTGATTATGGGT 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TGTGTTGTTTCTGTTGTTGGTAATTGGTGTGGGAAAGAGAAACGTGGGTTGATTATGGGT 180
Query 535 TTGTGGAACTCTCATACTTCTGTTGGGAATATTCTCGGTTCGGTTATTGCGTCTTCGGTT 594
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GTGTGGAATTCTCATACTTCTGTTGGGAATATTCTTGGTTCGGTTATTGCGTCTTCGGTT 240
Query 595 CTTGATTTCGGTTGGGGTTGGTCttttgttttgcctggtgtgttggtgcttgtgtctgga 654
||||||||||| ||||| |||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 241 CTTGATTTCGGATGGGGATGGTCTTTTGTTTTGCCTGGTGGGTTGGTGATTGTTTCTGGA 300
Query 655 gtggttgtgtttatgtttcttgttgttAGTCCTAATGATTTGGGGTTTGAAGAATTGGGT 714
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 301 GTGGTTGTGTTTATGTTTCTTGTTGTTAGTCCTCATGATTTGGGGTTTGAAGAACCGGGT 360
Query 715 AAAGAGATTGAGATTGAGATGAGTTTAGGTGAGAATGTAGAGGAAAGTTTGAGGAAACAT 774
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGAGATTGAGATCGAGATGAGTTTAGGTGAGAATGTAGAGGAAAGTTTGAGGAAACGG 420
Query 775 GAAGCTGAGGGCGCGGTGCTACTTGAAAA---CG-T--A---GATGATTCGTCGTTTGCT 825
|||||||||| || ||||| |||||||| || | | |||||||| | |||||||
Sbjct 421 GAAGCTGAGGATGCAGTGCTTCTTGAAAACGTCGATGAATTGGATGATTCCTTGTTTGCT 480
Query 826 ATCGGGTTTCTCGAGGCTTGGAGATTGCCTGGTGTTGCGCCTTACGCTTTCTGTTTGTTT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCGGGTTTCTCGAGGCTTGGAGATTGCCTGGTGTTGCGCCTTACGCTTTCTGTTTGTTT 540
Query 886 TTCTCGAAACTCGTCGCTTACACGTTCTTGTATTGGTTACCATACTACTTAAGGCACACA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCTCGAAACTCGTCGCTTACACGTTCTTGTATTGGTTACCATACTACTTAAGGCACACA 600
Query 946 GCTGTTGCGGGTGTGAATCTCTCCCATAAAACCGCTGGGATTCTCTCGACGGTCTTTGAC 1005
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 601 GCTGTTGCGGGTGTGAATCTCTCCCACAAAACCGCTGGGATTCTCTCGACAGTCTTTGAC 660
Query 1006 GTTGGAGGAGTTCTTGGTGGAATATCAGCAGGGTTCATTTCCGATAAAATTAAAGCGCGT 1065
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATAGGAGGAGTGCTTGGTGGAATATCAGCAGGGTTCATTTCCGATAAAATTAAAGCGCGT 720
Query 1066 GCGCTCACGTCAATCACATTCTTGGCACTCTCTATTCCTGCTTTAATTATGTACAGAGTC 1125
|| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 721 GCACTCACATCAATCACATTCTTGGCACTCTCCATTCCTGCTCTAATTATGTACAGAATA 780
Query 1126 TATGGAAGTGTGTCCATGTTCATCAACATCGTCTTGATGTTTATATCCGGGTTATTAGTA 1185
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATGGGAGTGTGTCAATGTTCATCAACATCGTCTTGATGTTTATATCCGGGTTATTAGTA 840
Query 1186 AACGGTCCTTATGCACTAATAACCACAGCTGTTGCAGCTGATCTCGGAACACAAGACTCT 1245
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 AACGGTCCTTATGCACTAATAACCACAGCAGTTGCAGCTGATCTCGGAACACAAGACTCC 900
Query 1246 ATAAAAGGGAATGGTCGAGCTTTGGCGACAGTAACTGCTATTATAGACGGTACTGGTTCG 1305
|| ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ATTAAAGGAAATGGTCGGGCATTGGCGACAGTAACTGCTATTATAGATGGTACTGGTTCG 960
Query 1306 GTTGGCGCAGCTTTGGGTCCGTTGCTTGCTGGTTACATATCGAGCAGAGGGTGGAACAGT 1365
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 961 GTTGGTGCAGCTTTGGGACCGTTACTCGCTGGTTACATATCGAGCAGAGGGTGGAACAGT 1020
Query 1366 GtttttttCATGCTTATTGTTTCAATATTCTTTGCGGGTTTGTTCTTGGTTCGGCTTGCA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTTTTTTTCATGCTTATTGTTTCAATATTCTTTGCGGGTTTGTTCTTGGTTCGGCTTGCA 1080
Query 1426 AAGTCTGAGATCAATACGATGAGGTCCGGAGAATTGATAGCGTCGAGTGTTCCTTAAAGC 1485
||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1081 AAGGCTGAGATCAATATGATGAGGTCCGGAGAATTGATAGCGTCGAGTGATCCTCAAAGC 1140
Query 1486 TGATGATTTTGATCCCAGCAGGATTGTATACAAAGGTAGTATCAGGTACATAGATTCAAA 1545
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGATGATTTTGATCCCAGCAG-ATTGTATACAAAGGTAGTATCAGGTACATAGATTCAAA 1199
Query 1546 CAATACAATACAAATTGAGACACCACCTGATTTGTTTACTACCATTTTAGTTTAGATGAA 1605
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1200 CAATACAATACAAATTGAGACACCGCCTGATTTGTTTTCTACCATTTTAGTTTAGATGAA 1259
Query 1606 GTAAAGTCTACTATTTTTGATATTTCACGACATTGAAGT 1644
| |||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCAAAGTCTACTATTTTTGATATTTCACGACATTGAAGT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5