BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13130.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479202 jgi|Araly1|479202|fgenesh2_kg.3__1903__AT3G17270.1 883 0.0
Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457 366 2e-100
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 366 2e-100
> Ahg479202 jgi|Araly1|479202|fgenesh2_kg.3__1903__AT3G17270.1
Length=1050
Score = 883 bits (478), Expect = 0.0
Identities = 611/675 (91%), Gaps = 10/675 (1%)
Strand=Plus/Plus
Query 454 AAAATCTTCGTGTAGCTGAGTTTGAAATCTTTGATTTTGGATCTGATT-GTGGAAGGGTT 512
|||| || || || |||| ||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 290 AAAAACTCCGGGTTGCTGTGTTTGAAATCTATGATTTTGGATCTGATTCTTGG-AGGGTT 348
Query 513 ATTGATGATGCTATCACTTGGGGAATATTCTCTGCTGGTGTGTCTTTCAATGGTA-ATAC 571
||||||||| ||| | |||||| ||||| |||||||| || ||||| ||||| | ||||
Sbjct 349 CTTGATGATGATATGATTTGGGGCATATTTTCTGCTGGCGTTTCTTTGAATGG-AGATAC 407
Query 572 TTACTGGATTGGTGGAGAGAAAGAAACTGGTTTTTTCTTGATGGATTTTGATTTCACAAC 631
|| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 408 TTTTTGGATTGGTGGAGACAAAGAAACTGGTTTTTTCTTGATGTATTTCGATTTCACAAC 467
Query 632 AGAGAGGTTTGGGCGTTTTCCTCTTCCGTATCAGAGTTAT-GATTATGAAGATATCGCGG 690
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 468 AGAGAGATTTGGGCGTTTTCCTCTTCCGTATCAGAGTT-TCGATTATGAAGATATCGCGG 526
Query 691 TTCTATCGGTAGTTAAGGAAGAAAAACTCTCCTTGATGAATCAGAATATTCATATAAATT 750
||||||| | |||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 527 TTCTATCACTTGTTAGGGAAGAAAAACTCTCCTTGTTGAATCAGAATCTTCATATAAATT 586
Query 751 CTTCAGAGATGAAGATATGGGTGACTAATAAGTTTGATGAAGCCAAATACTTGTCATGGA 810
| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 587 CATCAGAGATGAAGATATGGGTGACCAATAAGTTTGATGAGGCCAAAGACTTGTCATGGA 646
Query 811 GCCAGTTCTTAGTAGTGGATTTTGATAAATTTACGTTACCAAATTTGAACAGCGTGATAA 870
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 647 GCCAGTTCTTAGTAGTGGATTTTGATAAATTTACGTTACCATATGTGAATAGCGTGATAA 706
Query 871 CTTTCTTGTTGGACGAGGAGAATAAAGTGGCACTGTGTTGTGATACAGACATGGAAGATG 930
|||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 707 GTTTCTTCTTGGACGAGGAGAGTAAAGTGGCAGTGTGTTGTTATACAGACATGGAAGATG 766
Query 931 AAGAGAGGACCAAAATCTATATTGTTGGAGTGGATCTTTGTAAACAAGTCTTTAAAGAGG 990
|||| |||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||
Sbjct 767 AAGAAAGGACCAAAATCTACATTGTTGGAGTGGATCTTTATAAAGAAGTCTATAAAGAGG 826
Query 991 TTACAAAGGGATCAGTTCTTAATTGGCCATGTTTCGTCAGTTATGCTCCAAATTTGGTTC 1050
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTACAAAGGGATCAATTCTCAATTGGCCATGTTTCGTCAGTTATGCTCCAAATTTGGTTC 886
Query 1051 ACATTCAGAAAGACACTC-CC-AAAGTTAAAAAGAAATTGAGAGCAAAGGAGGTAAGTCT 1108
||||||||||| || ||| || |||| ||||||||| |||||| ||||||||||| ||
Sbjct 887 ACATTCAGAAA-AC-CTCACCCAAAGGCAAAAAGAAAATGAGAGAAAAGGAGGTAACTCA 944
Query 1109 AATGGATCACCTTAG 1123
|||| ||||||||||
Sbjct 945 AATGAATCACCTTAG 959
Score = 399 bits (216), Expect = 2e-110
Identities = 266/290 (92%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 16 ATGACGAAGATTCCCAATCTTCCAGACGATTTGGAATCGGAGATACTCT-CTAGGATTCC 74
|||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||
Sbjct 1 ATGATGAAGATTCCCAATCTTCCAGACGATTTGGAATCGGAAATACTCTGC-AGGGTTCC 59
Query 75 GGCAAAGTCTCTAACGAAATTGAAAACTACTTGTAAAAGATGGTACGTTTTATTCAGAGA 134
||| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||
Sbjct 60 GGCGAAGTCTCTAACGAAACTGAAAACTACTTGTAAAAGATGGTACGCTTTGTTCAGAGA 119
Query 135 TCCGAAATTCGCGAAGAAGAACTTGGGTAAATCAGCGAGAGAGGTGATGTTAGTGATGAA 194
||||| ||||| |||| |||||||||||||||||||||| || ||||||||| |||||||
Sbjct 120 TCCGAGATTCGTGAAGCAGAACTTGGGTAAATCAGCGAGGGAAGTGATGTTACTGATGAA 179
Query 195 TCAAAGG-TTACACTCAATTAGCGTCAATCGCCATGGAATTCACGAGGGCGTTGATCCAT 253
||| ||| || ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 180 TCATAGGGTT-CACTCAATTAGCGTCAATCGCCATGGAATTCACGACGGAGTTGATCCAT 238
Query 254 CCATGGAGTTTTCAGGTAAACTCATCCGGCTAAGCGATTCGAAAGACGTC 303
| |||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 239 CTATGGAGTTCTCAGGTAAACTCATCAGGCTAAGCGATTCGAAAGATGTC 288
> Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457
Length=1125
Score = 366 bits (198), Expect = 2e-100
Identities = 449/569 (79%), Gaps = 22/569 (4%)
Strand=Plus/Plus
Query 554 GTCTTTCAATGGTAATACTTACTGGATTGGTGGAGAGAAAGAAACTGGTTTTTTCTTGAT 613
|||||| || || |||||||| ||| ||| |||||| ||||||| ||| ||||| || |
Sbjct 567 GTCTTTGAAAGGAAATACTTATTGGGTTGCTGGAGATAAAGAAAATGGCCTTTTCATGTT 626
Query 614 GGATTTTGATTTCACAACAGAGAGGTTTGGGCGTTTTCCTCTTCCGTATCAGAGTTATGA 673
| |||||||||||||||| ||||| |||||||||||||||||||||| | | |||| | |
Sbjct 627 GTATTTTGATTTCACAACGGAGAGATTTGGGCGTTTTCCTCTTCCGTTTGAAAGTTTTAA 686
Query 674 TTATGAAGATATCGCGGTTCTATCGGTAGTTAAGGAAGAAAAACTCTCCTTGATGA-ATC 732
| |||||||| ||||| |||||| || |||| ||||||||||||||| || | | |||
Sbjct 687 TCCTGAAGATACCGCGGCTCTATCAGTTGTTAGGGAAGAAAAACTCTCGGTG-TTACATC 745
Query 733 AGAATATTCATATAAATTCTTC--A-GAGATGAAGATATGGGTGACTAATAAGTTTGATG 789
|||| |||| | | ||| ||| | ||||||||||||||| |||| |||||| | ||||
Sbjct 746 AGAAGATTC-T-T-GATTTTTCAAATGAGATGAAGATATGGTTGACCAATAAGATCGATG 802
Query 790 AAGCCAAATACTTGTCATGGAGCCA-GT--TCTTAGTAGTGGATTTTGATAAATTTACGT 846
|| ||| | | ||||| |||||| | | ||||| |||||||| ||||||||||| |
Sbjct 803 AAACCATAGAATTGTCGTGGAGCAACTTCGTCTTAACAGTGGATTATGATAAATTTAATT 862
Query 847 TACCAAATTTGAACAGCGTGATAACTTTCTTGTTGGACGAGGAGAATAAAGTGGCACTGT 906
|||| | || | |||| || |||||||||||||||||||||||||||||||||||
Sbjct 863 TACCCAGCGTGGTGAATGTGACAAGTTTCTTGTTGGACGAGGAGAATAAAGTGGCACTGT 922
Query 907 GTTGTGATA-CAGACATGGAAGATGAAGAGAGGACCAAAATCTATATTGTTGGAGTGGAT 965
||| ||||| | |||||||| |||||| | | ||||| | |||| ||||||||| ||||
Sbjct 923 GTTCTGATATC-GACATGGATGATGAATATAAGACCAGAGTCTACGTTGTTGGAGAGGAT 981
Query 966 CTTTGTAAACAAGTCTTTAAAGAGGTTACAAAGGGATCAGTTCT-T-AATTGGCCATGTT 1023
| | ||||||||||| |||||| |||||||| ||| || | | ||||||||| ||
Sbjct 982 ATATATAAACAAGTCTATAAAGACACTACAAAGGCATC--TTATATCAATTGGCCAC-TT 1038
Query 1024 -TCGTCAGTTATGCTCCAAATTTGGTTCACATTCAGAAAGACACTCCCAAA-GTTAAAAA 1081
|| ||| ||||| ||||| |||||| |||||| ||||| | || | |||| | ||||
Sbjct 1039 CTCATCAATTATGTTCCAAGTTTGGTGCACATTAAGAAAAATACACTCAAAAGGCAAAA- 1097
Query 1082 GAAATTGAGAGCAAAGGAGGTAAGTCTAA 1110
|||| || | ||| |||||| ||| |||
Sbjct 1098 GAAAAGGAAATCAAGGGAGGTTAGT-TAA 1125
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 366 bits (198), Expect = 2e-100
Identities = 534/687 (78%), Gaps = 59/687 (9%)
Strand=Plus/Plus
Query 456 AATCTTCGTGTAGCTGAGTTTGAAATCTTTGATTTTGGATCTGATT-GTGGAAGGGTTAT 514
||| || |||| | ||| ||||| |||| ||| ||| | ||||||| ||| |||||| |
Sbjct 442 AATGTTTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGG-AGGGTTCT 500
Query 515 TGATGA-TG--CT-ATCACTTGGGGAATATTCTCTGC--TGGTGTGTCTTTCAATGGTAA 568
|||||| || || || || ||||| || | ||||| ||| ||||||| || || ||
Sbjct 501 TGATGACTGCACTCATAAC-TGGGGCTTA-T-TCTGCAATGGCATGTCTTTGAAAGGAAA 557
Query 569 TACTTAC-TGGATTGGTGGAGAGA-AAGAAACTGGTTTTTTCTTGATGGATTTTGATTTC 626
||||||| | | ||| |||||| | ||||||| || |||||| || || |||||||||||
Sbjct 558 TACTTACTTTG-TTGCTGGAGA-ACAAGAAACAGGATTTTTCATGCTGTATTTTGATTTC 615
Query 627 ACA-ACAGAGAGGTTTGGGCGTTTTCCTCTTCCGTATCAGAGTTATGATTATGAAGATAT 685
| | |||||||| |||| |||| | |||||||||||||| |||| ||||| |||||| |
Sbjct 616 A-AGACAGAGAGATTTGAGCGTCTCCCTCTTCCGTATCAAAGTTTTGATTCTGAAGA-AA 673
Query 686 C-GCGGTTCTATCGGTAGTTAAGGAAGAAAAACTCT-CCTTGATGA-ATCAGAATATTCA 742
| ||||||||||| || |||| |||||||||||| | | || | | | |||||||||||
Sbjct 674 CTGCGGTTCTATCAGTTGTTAGGGAAGAAAAACT-TGCGGTG-TTACAGCAGAATATTCA 731
Query 743 TATAAATTCTTC--A-GAGATGAAGATATGGGTGACTAATAAGTTTGATGAAGCCAAATA 799
| || || | ||||||| ||||||||| || |||||| ||||||| |||||| |
Sbjct 732 -A-GCGTT-GTCAAATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGA 788
Query 800 CTTGTCATGGAGCCA-GT--TCTTAGTAGTGGATTTTGATAAATTTACG-TTACCAAATT 855
|||| | |||||| | | ||||| |||||||| ||||| ||||| | ||||||| |
Sbjct 789 CTTGACGTGGAGCAACTTCGTCTTAACAGTGGATTATGATAGATTTA-GTTTACCAAGTG 847
Query 856 TGAACAGCGTGAT-AA-CTTTCTTGTTGGACGAGGAGAATAAAGTGGCACTGTGTTGTGA 913
|||| | ||| | || | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 848 TGAATAATGTG-TCAAGC-TTCTTGTTGGACGAGGAGAATAAAGTGGCATTGTGTTGTGA 905
Query 914 TACAGACATGGAAGATGAAGAGAGGACCAAAATCTATATTGTTGGAGTGGA-T-CTTTGT 971
|| ||||||||| |||||||| | ||||| | |||| |||||||||| | | | | | |
Sbjct 906 TAGAGACATGGATGATGAAGATAAGACCAGAGTCTACATTGTTGGAGAG-ACTACATA-T 963
Query 972 AAACAAGTCTT-TAAAGAGGTTACAAAGGGATC--AGTTCTTAATTGGCCATGTT-TCGT 1027
||| |||| || ||||||| || ||||||||| | ||| ||||||||| || || |
Sbjct 964 AAAGAAGT-TTATAAAGAGACTATAAAGGGATCCCATTTC--AATTGGCCAC-TTCTCCT 1019
Query 1028 CAGTTATGCT-CCAAATTTGGTTCACATTCA-GAAAGACACTCCCAAA-GTTAAAAAGAA 1084
||||||| || |||| |||||||||||||| |||| | || |||||| | |||| |||
Sbjct 1020 CAGTTAT-CTTCCAAGCTTGGTTCACATTCACGAAA-ATACACCCAAAAGACAAAA-GAA 1076
Query 1085 ATTGAGAGCAA-AGGAGGTAAGTCTAA 1110
| || | ||| | ||||| ||| |||
Sbjct 1077 AGGGAAA-CAAGAAGAGGTTAGT-TAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5