BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13150.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342995 jgi|Araly1|342995|fgenesh1_pg.C_scaffold_3002758 728 0.0
Ahg931073 jgi|Araly1|931073|scaffold_303530.1 569 8e-162
> Ahg342995 jgi|Araly1|342995|fgenesh1_pg.C_scaffold_3002758
Length=975
Score = 728 bits (394), Expect = 0.0
Identities = 615/718 (86%), Gaps = 30/718 (4%)
Strand=Plus/Plus
Query 55 TCACTTGCCTTCTCTTCCTTGCCCCCATTGAGTCCTTCTCCGTCGTCATCCCGTCGCAAT 114
|||| || || ||| ||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 82 TCACATGACTACTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATTCCGTCGTAAT 141
Query 115 TCAATACCATTGATGAACCCGTCT--G-C-T-TC-TGTGGAGAGTAGAGACTCTTCCATT 168
||| |||||| ||||| || ||| | | | || |||||| | ||||||||||||||||
Sbjct 142 TCATTACCATCGATGAGCCTTTCTCCGTCTTCTCATGTGGAAAATAGAGACTCTTCCATT 201
Query 169 AGGG-T--TAAGAAGAAATC-TTTATTGCCTCCTTTGTGTGTGAAGAGAAGAGCACCCAA 224
|||| | |||||| ||| | || ||||||||||||| |||| |||||||||||| || |
Sbjct 202 AGGGCTAATAAGAA-AAACCATTCATTGCCTCCTTTGGGTGTAAAGAGAAGAGCAGCC-A 259
Query 225 AGACGACATTGAACCTTTCAA-GAGACACTACAGGAGTCTTTCAGTGGATAGTTGTTTGA 283
| | |||||||||||||| || ||||||| |||| ||| ||||| |||| |||||||| |
Sbjct 260 A-A-GACATTGAACCTTT-AAGGAGACACAACAGAAGTGTTTCACTGGACAGTTGTTTCA 316
Query 284 GTGACTTACTAAAACTGCCTCCTTCTCCGAATAACGTTTCCTCTTCAAGATCGGTTGATG 343
||||||||| || |||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 317 GTGACTTACCGAAGTTGCCTCCTTCTCCGGGTAACGTTTCCTCTTCCAGTTCGGTTGATG 376
Query 344 GAGAAC-AAAATGCTTCCGAGCTTGAGTTTGATACCAGTGTTTATACTGATGATGAATTG 402
||| || | ||||||||||| || ||||||| || ||||| ||||||||||||||| |||
Sbjct 377 GAG-ACGAGAATGCTTCCGACCTCGAGTTTGGTAGCAGTGATTATACTGATGATGAGTTG 435
Query 403 AATAAGATAGCAAAGAGTACCAAACTTAAAGAGGTTGCATCGGATCCTAAGGAAGTCAGA 462
|||||||| ||| ||||| ||| |||||||||| ||| ||| ||||||||| ||||||||
Sbjct 436 AATAAGATCGCAGAGAGTCCCAGACTTAAAGAGTTTGAATCTGATCCTAAGAAAGTCAGA 495
Query 463 AGAATCTTGAAAAATCAAGAGTCCGCGGCACGTTCAAAGCAGAAGAAGTTACAATATATG 522
|||||||||||||||| |||||| ||||||||||||||||||| ||||||||| || ||
Sbjct 496 AGAATCTTGAAAAATCGAGAGTCAGCGGCACGTTCAAAGCAGAGGAAGTTACAGTACATT 555
Query 523 ATTAACTTGGAACT-CAAAATAAACTTTCTTGAGAACAA-AAATGCTTCAATATTTGAAA 580
||| |||||||| | || |||||||||||||||| || |||| ||||||||| |||||
Sbjct 556 ATTGACTTGGAA-TACAGTGTAAACTTTCTTGAGAA-AAGAAATACTTCAATATATGAAA 613
Query 581 AGATCAAGCTTTTGGAGAATGATAAAACAATGAGGATGAATGAGAAGAAGGAAATCA-TG 639
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 614 AGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACT- 672
Query 640 ATTCGAATTGAATC-ATTGGAGCAACACGC-CGAACTTCGTGATGCCTTGACCGAACATT 697
|||||||||||||| || ||||||||| || | ||||||||||||||||||| ||||| |
Sbjct 673 ATTCGAATTGAATCGAT-GGAGCAACAAGCGC-AACTTCGTGATGCCTTGACTGAACAAT 730
Query 698 TGCACGTAGAAATTGAAAGGCTAAAAGCTGT-ATTAATTTCGAACGAAAAAGGGAATG 754
|||| | ||||||||||||||| | || || | |||||| || |||||||||||||
Sbjct 731 TGCAAGCGGAAATTGAAAGGCTACATGCGGTTAC-AATTTCAAATGAAAAAGGGAATG 787
> Ahg931073 jgi|Araly1|931073|scaffold_303530.1
Length=741
Score = 569 bits (308), Expect = 8e-162
Identities = 576/701 (82%), Gaps = 35/701 (5%)
Strand=Plus/Plus
Query 1 ATGAATGGATCCGACAATAGCACTCCTTCCCGACCACGGTCGATAACTCAGCCTTCACTT 60
|||||||||||| |||||| ||||||||| ||||||||| ||| ||||| || || | |
Sbjct 23 ATGAATGGATCCAACAATATCACTCCTTCGGGACCACGGTTGATGACTCAACCATCGCCT 82
Query 61 GCCTTCTCTTCCTTGCCCCCATTGA---GTCCTTCTCCGTCGTCATCCCGTCGCAATTCA 117
||| | | ||||||||||| |||| | |||||| |||| |||| |||||||||||||
Sbjct 83 GCC-T-T-GTCCTTGCCCCCGTTGAGCCGCCCTTCTTCGTCATCATTCCGTCGCAATTCA 139
Query 118 ATACCAT---TGAT--GAAC-CCGTCTGCTTC-TGTGGAGAGTAGAGACTCTTCCATTAG 170
|||||| |||| | ||||| || || |||||||||||||||||||||||||||
Sbjct 140 TTACCATCAATGATCCTTTCTCCGTCAGC-TCATGTGGAGAGTAGAGACTCTTCCATTAG 198
Query 171 GGTTAAGAAGAAATCTTT-ATTGCCTCCTTTGTG-TGTGAAGAGAAGAGCACCCAAAGAC 228
|| |||||| ||| | || |||||||||| || | |||||| ||||||||| ||||||
Sbjct 199 GGATAAGAA-AAACCCTTCATTGCCTCCTCTG-GATGTGAAAAGAAGAGCAGAGAAAGAC 256
Query 229 GACATTGAACCTTTCAAG-AGACACTACAGGAGTCTTTCAGTGGATAGTTGTTTGAGTGA 287
| |||||||||| ||| |||||| | |||||| ||||| ||||||||| ||| | |||
Sbjct 257 -A--TTGAACCTTT-AAGGAGACACAATAGGAGTGTTTCAATGGATAGTTTTTTCAATGA 312
Query 288 CTTACTAAAACTGCCTCCTTCTCCGAATAACGTTTCCTCTTCAAGATCGGTTGATGGAGA 347
|||||| || || ||| ||||| | |||||||||||||||||| | ||||||||||||
Sbjct 313 CTTACTGAAGTTGACTCTTTCTCAGGGTAACGTTTCCTCTTCAAGTTTGGTTGATGGAGA 372
Query 348 ACAA-AATGCTTCCGAGC-TTGAGTTTGATACCAGTGTTTATACTGATGATGAATTGAAT 405
||| |||||||||| || ||||||||| || ||||| ||||||||||||||| ||||||
Sbjct 373 -CAAGAATGCTTCCG-GCCTTGAGTTTGGTAGCAGTGATTATACTGATGATGAGTTGAAT 430
Query 406 AAGATAGCAAAGAGTACCAAACTTAAAGAGGTTGCATCGGATCCTAAG-GAA-GTCAGAA 463
| ||| || ||||||||||||||||| || | ||||| ||||| | | ||| |||||||
Sbjct 431 ATGATTGCGGAGAGTACCAAACTTAAAAAGATAGCATCTGATCC-A-GTGAAAGTCAGAA 488
Query 464 GAATCTTGAAAAATCAAG-AGTCCGCGGCACGTTCAAAGCAGAAGAAGTTACAATATATG 522
|||||||| || | || | || || || ||||||||||| | ||| ||| ||| |
Sbjct 489 GAATCTTGGCGAACCGAGTA-TCAATGGTACTTTCAAAGCAGAGGCAGTCACAGTATGTT 547
Query 523 ATTAACTTGGAACTCAAAATAAACTTTCTTGAGAACAAAAATGCTTCAATATTTGAAAAG 582
||| ||||||||| |||||||| |||||||||||| ||||||| ||||| | |||||||
Sbjct 548 ATTGACTTGGAACAGAAAATAAAATTTCTTGAGAACGAAAATGCATCAATGTCTGAAAAG 607
Query 583 ATCAAGCTTTTGGAGAATGATAAAACAATGAGGATGAATGAGAAGAAGGAAATCATGATT 642
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 608 ATCACGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACGATT 667
Query 643 CGAATTGAATCATTGGAGCAACACGC-CGAACTTCGTGATG 682
||||||||| ||||||||||| | | ||||||||||||
Sbjct 668 AAAATTGAATCGTTGGAGCAACAAGTGC-AACTTCGTGATG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5