BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13290.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480301 jgi|Araly1|480301|fgenesh2_kg.3__3002__AT2G13290.1 1899 0.0
Ahg926062 jgi|Araly1|926062|scaffold_201623.1 97.1 3e-19
> Ahg480301 jgi|Araly1|480301|fgenesh2_kg.3__3002__AT2G13290.1
Length=1422
Score = 1899 bits (1028), Expect = 0.0
Identities = 1216/1304 (93%), Gaps = 23/1304 (2%)
Strand=Plus/Plus
Query 193 CTTCGTGTGTTCTCATTTCTTAATCTTATACACTTGAAATCTCCAAAAAGGGGAAAAAGA 252
|||| || ||||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 138 CTTCTTGGGTTCTCATTTCTTTATCTTATACACTTGAAATATCCAAACAGGGGAAAAAGA 197
Query 253 AAATGAGTTGGTGAAGTTTGAGAACCATAGAGATGACGATTCGATCGTTGCGTAAACCAC 312
||||||| | || | | | | |||||||||||||||||||||| || ||||
Sbjct 198 AAATGAG-T--TG--G--T--G------A-AGATGACGATTCGATCGTTGCGGAAGCCAC 241
Query 313 CGCCGGTTAAACTTGTGTTTCCTA-CTCTGATTATACTCTTCTTGACATGTTTGTTATGT 371
|||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||
Sbjct 242 CGCCTGTTAAACTTGTGTTTCC-ATCTCTGATTATACTGTTCTTGACATGTTTGTTTTGT 300
Query 372 A-TCTTAACAAATTTCCAAACCATATCGTATCTTTTCCGTCCGCTTTGGGATAAACCGCC 430
| || | || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 ATTC-TGACGAATTTGCAAACCATTTCGTATCTTTTCCGTCCGCTTTGGGATAAACCGCC 359
Query 431 ACCGCCTTTTAAACGGATACCGCATTACTATGCGGAGAATGTTTCCATGGGACATCTTTG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACCGCCTTTTAAACGGATACCGCATTACTATGCGGAGAATGTTTCCATGGGACATCTTTG 419
Query 491 TGAGCTTCACGGCTGGACACCGCGGTTAGAACCGAGGCGAGTGTTTGATGCCATCATTTT 550
||| ||||| || |||||||| |||| || |||||||| ||| |||||||||||||||||
Sbjct 420 TGAACTTCATGGGTGGACACCACGGTCAGTACCGAGGCAAGTCTTTGATGCCATCATTTT 479
Query 551 CAGTAATGAGCTTGATCTTCTTGAAGTCAGATGGCGGGAATTGGAGCCTTATGTGTCGAA 610
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 480 CAGTAATGAGCTTGATCTTCTTGAACTCAGATGGCGGGAGTTGGAGCCTTATGTTTCGAA 539
Query 611 GTTTGTGATATTGGAGTCAAACACTACGTTTACCGGGATCCCGAAGCCGCTTTTCTTCGA 670
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 540 GTTTGTGATCTTGGAATCAAACACTACGTTTACTGGGATCCCGAAGCCGCTTTTCTTTGA 599
Query 671 TTCCAATAAGGAGAGATTTGCGTTTGCGGAGGGGAAGATTGTACATGGAGTGTTTCCTGG 730
||| |||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 600 TTCTAATAAGGAGAGATTCGCGTTTGCTGAGGGTAAGATAGTACATGGAGTGTTTCCTGG 659
Query 731 GAAGAAACGGTCTACGGGGCAGCCGTATGAGGATCCGTTTTTGCTTGAGGGGCAACAGCG 790
||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GAAGAAACGCTCTAAGGGGCAGCCGTATGAGGACCCGTTTTTGCTTGAGGGGCAACAGCG 719
Query 791 AGTTGCGATGAACTGGTTGCTTAGAGAAGCTGGTGTATCGGATGGAGATGCGGTGATAAT 850
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 720 AGTTGCGATGAACTGGTTGCTTAGAGAAGCTGGAATTTCGGATGGAGATGCGGTGATAAT 779
Query 851 GTCAGATGCAGACGAGATTCCGAGTCCTCATACTGTGAAGTTTCTACAGTGGTGTGATGG 910
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 780 GTCAGATGCAGACGAGATTCCGAGCCCTCATACTGTGAAATTTCTACAGTGGTGCGATGG 839
Query 911 GATACCAGATGTAATGCAT-TTGGAGATGAGGGAATACATGTACTCCTTTGAGTTTCCGG 969
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 840 GATACCAAATGTAATGCATCTT-GAGATGAGGGAATACATGTACTCCTTTGAGTTCCCGG 898
Query 970 TTGATTACAGTAGCTGGAGAGCCTCTGTTCATATATATAGTAGGAAGTGGACTCAATACC 1029
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 899 TTGATTACAGCAGCTGGAGAGCCTCTGTTCATATATACAGCAGGAAGTGGACTCAATACC 958
Query 1030 GGCACTCACGACAAACGGACTTGATATTATCCGACGCAGGGTGGCATTGCAGCTTCTGTT 1089
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGCACTCCCGACAAACAGACTTGATATTATCCGACGCAGGGTGGCATTGCAGCTTCTGTT 1018
Query 1090 TCAGACGACTCAACGAGTTTGTTTTCAAGATGAAAGGTTATAGTCATGCAGATAGAGTCA 1149
||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1019 TCAGAAGACTCAACGAATTCGTTTTCAAGATGAAAGGTTATAGTCATGCAGACAGAGTCA 1078
Query 1150 AACGCAAGGAGTTTTTGGATTATCAGAGGATACAAAAACATATTTGCAAAGGTTATGATC 1209
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1079 AACGCAAGGAGTTTTTGGATTATCAGAGGATACAAAAACATATATGTAAAGGTTATGATC 1138
Query 1210 TCTTTGACATGCTTCCTGAAAAATACAGCTTCCAAGAGTTGATTAGCAAAATCGGACCCA 1269
| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1139 TTTTTGACATGCTTCCCGAAAGATACAGCTTCAAAGAGTTGATTAGCAAAATCGGACCCA 1198
Query 1270 TCCCGCCTTCTGCGTCTGCGGTACATCTACCAGCCTTTTTGATTCAGAACGCTGCTCGCT 1329
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 TCCCGCCTTCTGCATCTGCGGTACATCTACCTGCCTTTTTGATTCAGAACGCTGCTCGCT 1258
Query 1330 TTCGGTTTCTCCTCCCGGGAGGTTGTCTCCGAGAACCCTAGCTGAAGATTAAGTACAAAA 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCGGTTTCTCCTCCCGGGAGGTTGTCTCCGAGAACCCTAGCTGAAGATTAAGTACAAAA 1318
Query 1390 TAGAGAAGCAATAGTTTCTTGTTACAAAGGTTTTT-GGCGTCACACCAACTTAACCTGAA 1448
|||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 1319 TAGAGAAGCAATAGTTTCTTGTTAAAAAGGTTTTTTGGCATCACACCAACTTAACCTGAA 1378
Query 1449 ACAACAGATAAATAAAGAAATAGATCTTATAACATGTTCTGTTT 1492
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1379 ACAACAGATAAATAAAGAAATAGATCTTATCACATGTTCTGTTT 1422
> Ahg926062 jgi|Araly1|926062|scaffold_201623.1
Length=1214
Score = 97.1 bits (52), Expect = 3e-19
Identities = 75/85 (88%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 1066 CAGGGTGGCATTGCAGCTTCTGTTTCAGACG-ACTCAA-CGAGTTTGTTTTCAAGATGAA 1123
||||||||||||||||||||||||||||||| | | || ||||||||| ||||| |||||
Sbjct 886 CAGGGTGGCATTGCAGCTTCTGTTTCAGACGGA-T-AAGCGAGTTTGTGTTCAAAATGAA 943
Query 1124 AGGTTATAGTCA-TGCAGATAGAGT 1147
|| ||||||||| | | ||||||||
Sbjct 944 AGCTTATAGTCACTAC-GATAGAGT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5