BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13295.1
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931079 jgi|Araly1|931079|scaffold_303536.1 496 8e-140
> Ahg931079 jgi|Araly1|931079|scaffold_303536.1
Length=374
Score = 496 bits (268), Expect = 8e-140
Identities = 300/316 (95%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAGAGCTTATACTATAGTCTCTATGTTTTTGTTAACACTGTTGGTGACTAGAGTA 60
||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 24 ATGATGAGAGCTTATACTATAGTCTCTATGTTTATGTTAACATTGTTAGTGACTAGAGTA 83
Query 61 ACATCTTCCCAAGTTAATGCTCCGTGTACTTGGACAGAGATTTCTGAAGAATATGATTAT 120
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 84 ACATCTTCCCAAGTTGATGCTTCGTGTAGTTGGACAGAGATTTCTGAAGAATATGATTAT 143
Query 121 TGTGGCGATTCTCTCACGCGTGGCGTTCCTTGGGTTTCTCCATTGAAAGTTTGTTGTGAT 180
|||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 144 TGTGGCGATTCTCTCATGCGCGGTGTTCCTTGGGTTTTTCCATTGAAAGTTTGTTGTGAT 203
Query 181 ACTATAAAATTGAACAAGATGAAATGCATATGCCAAGTCGTTACAAAAACGTTTTCGCAA 240
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 204 ACTATAAAATTGAACAAGATGAAATGCATATGCCAAAAGGTTACAAAAATGTTTTCGCAA 263
Query 241 AACTTTGACTTTTATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCT 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 AACTTTGACTTTAATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCT 323
Query 301 GGATCTTATTGCGGAG 316
||||||||||||||||
Sbjct 324 GGATCTTATTGCGGAG 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16979237105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5