BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G13295.1 Length=469 Score E Sequences producing significant alignments: (Bits) Value Ahg931079 jgi|Araly1|931079|scaffold_303536.1 496 8e-140 > Ahg931079 jgi|Araly1|931079|scaffold_303536.1 Length=374 Score = 496 bits (268), Expect = 8e-140 Identities = 300/316 (95%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 1 ATGGTGAGAGCTTATACTATAGTCTCTATGTTTTTGTTAACACTGTTGGTGACTAGAGTA 60 ||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| Sbjct 24 ATGATGAGAGCTTATACTATAGTCTCTATGTTTATGTTAACATTGTTAGTGACTAGAGTA 83 Query 61 ACATCTTCCCAAGTTAATGCTCCGTGTACTTGGACAGAGATTTCTGAAGAATATGATTAT 120 ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 84 ACATCTTCCCAAGTTGATGCTTCGTGTAGTTGGACAGAGATTTCTGAAGAATATGATTAT 143 Query 121 TGTGGCGATTCTCTCACGCGTGGCGTTCCTTGGGTTTCTCCATTGAAAGTTTGTTGTGAT 180 |||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||| Sbjct 144 TGTGGCGATTCTCTCATGCGCGGTGTTCCTTGGGTTTTTCCATTGAAAGTTTGTTGTGAT 203 Query 181 ACTATAAAATTGAACAAGATGAAATGCATATGCCAAGTCGTTACAAAAACGTTTTCGCAA 240 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 204 ACTATAAAATTGAACAAGATGAAATGCATATGCCAAAAGGTTACAAAAATGTTTTCGCAA 263 Query 241 AACTTTGACTTTTATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCT 300 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 AACTTTGACTTTAATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCT 323 Query 301 GGATCTTATTGCGGAG 316 |||||||||||||||| Sbjct 324 GGATCTTATTGCGGAG 339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16979237105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5