BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13350.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480303 jgi|Araly1|480303|fgenesh2_kg.3__3004__AT2G13350.1 2204 0.0
> Ahg480303 jgi|Araly1|480303|fgenesh2_kg.3__3004__AT2G13350.1
Length=1353
Score = 2204 bits (1193), Expect = 0.0
Identities = 1306/1359 (96%), Gaps = 13/1359 (1%)
Strand=Plus/Plus
Query 118 TTTTTCAGATTTAGTTTTGTCAAGAAAACACAAAATGTCTTTTCTTGCGCCTTGTCAAAT 177
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 TTTTTCAGATTTAGTTTTGTCAAGAAAA-A-AAAATGTCTTTTCTTGCGCCTTGTCAAAT 58
Query 178 TTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGAC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGAC 118
Query 238 ATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGG 178
Query 298 CGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTCTA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 TGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTTTA 238
Query 358 CGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCA 298
Query 418 TGTTGGAACGGTACAAGCCTTAATAAGTGACCTTGTAAGCCCTTCTTCGGCTATGAGATT 477
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 299 TGTTGGAACGGTACAAACCTTGATAAGTGACCTTGTCAGCCCTTCTTCGGCTATGAGATT 358
Query 478 CGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCCCACGGCCTCCTAAACATTGCGGT 537
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 TGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCACACGGCCTCCTAAACATTGCGGT 418
Query 538 GGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTT 478
Query 598 TCACAAGAAAAACATATCTTCAAAACCCGTAGGGCTTCGACGGTCAAAAAGTGATACAAG 657
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 479 TCACAAGAAAAACATATCTTCAAAACCTGTAGGGTTTCGACGGTCAAAAAGTGATACAAG 538
Query 658 CTCAATGGTGGATTCACCAAGGAAGGTGACACAATCCCGTGTGAGTTCTACTACAAACTC 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 CTCAATGGTGGATTCACCAAGGAAGGTTACACAATCCCGTGTGAGTTCTACTACAAACTC 598
Query 718 AGGATTTGATAAAGATGAGTTTTCTTCTGACTCTCAAATGGTTGTGTATGAGCCCCAAAG 777
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 599 AGGTTTTGAGAAAGATGAGTTTTCATCTGACTCTCAAATGGTTGTGTATGAGCCTCAAAG 658
Query 778 AAAAACGCCGAATACAATG---AGGCAAACAAAGCAACAACTCGTGTATGGGACACCGAT 834
|||||| ||||||||| || ||||||| |||||||||| |||||||||||||||||||
Sbjct 659 AAAAACCCCGAATACATTGTTGAGGCAAAAAAAGCAACAAATCGTGTATGGGACACCGAT 718
Query 835 GAGGCCAAGGAAAACGACAGCATATACCCCCAAAAGGAACACA-ATCGAATATGGAACAC 893
|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 719 GAGGCCAAGGAACACGACAGCATATACCCCCAAAAGGAACA-ATATCGAATATGGAACAC 777
Query 894 CAATGAGGTCAAGACCAATCGTTATTACAGAATCTGACTTAGGTCCTTCAGCCTCAGTAG 953
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 778 CAATGAGGTCAAGACCAATCGTTATTACAGAATCTGATTTAGGTCCTTCAGCCTCAGTGG 837
Query 954 TTGCTGCCCAAATAGCAAAAGAGAAAGCACTTACAGGGAAAGATGCGGAGAGTACTGTGA 1013
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 838 TTGCTGCCCAAATAGCAAAAGAGAAGGCACTCACAGGGAAAGATGCTGAGAGTACTGTGA 897
Query 1014 TAAGTGTTGGTGAACGAAGTGTCGAGGGTCTTCGTTCTAAGTTAGAAAGATGGCAAGCCA 1073
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 898 TAAGTGTTGGTGAACGAAGCGTCGAGGGTCTTCGTTCTAAGCTAGAAAGGTGGCAAGCCA 957
Query 1074 ATTTACCAGTGGTTTTAGACGTGGGGTCAAGTTATCAACCAAGTTCTGACTACAAAACAA 1133
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 ATCTACCAGTGGTTTTAGACGTGGGTTCAAGTTATCAACCAAGTTCTGACTACAAAACAA 1017
Query 1134 ACTCTAACTTTAACCCTAAATCAAGTTACAAGCCTAACGAAATCGTCCCAAGAAATCCTC 1193
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1018 ACTCTAACTTTAACCCTAAATCAAGTTACAAGCCCAATGAAATCGTGCCAAGAAATCCTC 1077
Query 1194 AAATGATTGGAGCTCCCATCCAAAAGCCAAGTGGGAGGAACAAGAAAAGTGGAGATAACG 1253
| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
Sbjct 1078 AGATGATTGGAGCTCCCATCCAAAAGCAAAGTGGGAGGAACAAGAAAGGAGGAGATAATG 1137
Query 1254 GATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCT 1197
Query 1314 CTAGTGGACAAAAAGCAGCCaagaagaagaagaaaaagaagTGATAAA-TAACAAACA-T 1371
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
Sbjct 1198 CTAGTGGACAAAAAGCAGCCAAGAAGAAGAAGAAAAAGAAGTGAAAAACTT-CAAACACT 1256
Query 1372 GATTCCTTCAATTCTAAATGATTCATTTCTCATTATGTTTCTATTTTTCAAGCTTGTCGA 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 -ATTCCTTCAATTCTAAATGATTCATTTCTCATTATGTTTCTATTTTTCAAGCTTGTCGA 1315
Query 1432 TTTTGCTACTCAATAATCCAAATTTATA-TAGTAAGACA 1469
|||||||||||||||||| ||||||||| ||||||||||
Sbjct 1316 TTTTGCTACTCAATAATC-AAATTTATAATAGTAAGACA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5