BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G13350.1 Length=1490 Score E Sequences producing significant alignments: (Bits) Value Ahg480303 jgi|Araly1|480303|fgenesh2_kg.3__3004__AT2G13350.1 2204 0.0 > Ahg480303 jgi|Araly1|480303|fgenesh2_kg.3__3004__AT2G13350.1 Length=1353 Score = 2204 bits (1193), Expect = 0.0 Identities = 1306/1359 (96%), Gaps = 13/1359 (1%) Strand=Plus/Plus Query 118 TTTTTCAGATTTAGTTTTGTCAAGAAAACACAAAATGTCTTTTCTTGCGCCTTGTCAAAT 177 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 1 TTTTTCAGATTTAGTTTTGTCAAGAAAA-A-AAAATGTCTTTTCTTGCGCCTTGTCAAAT 58 Query 178 TTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGAC 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 CTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGAC 118 Query 238 ATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 ATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGG 178 Query 298 CGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTCTA 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 179 TGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTTTA 238 Query 358 CGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCA 298 Query 418 TGTTGGAACGGTACAAGCCTTAATAAGTGACCTTGTAAGCCCTTCTTCGGCTATGAGATT 477 |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct 299 TGTTGGAACGGTACAAACCTTGATAAGTGACCTTGTCAGCCCTTCTTCGGCTATGAGATT 358 Query 478 CGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCCCACGGCCTCCTAAACATTGCGGT 537 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 359 TGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCACACGGCCTCCTAAACATTGCGGT 418 Query 538 GGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTT 478 Query 598 TCACAAGAAAAACATATCTTCAAAACCCGTAGGGCTTCGACGGTCAAAAAGTGATACAAG 657 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 479 TCACAAGAAAAACATATCTTCAAAACCTGTAGGGTTTCGACGGTCAAAAAGTGATACAAG 538 Query 658 CTCAATGGTGGATTCACCAAGGAAGGTGACACAATCCCGTGTGAGTTCTACTACAAACTC 717 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 539 CTCAATGGTGGATTCACCAAGGAAGGTTACACAATCCCGTGTGAGTTCTACTACAAACTC 598 Query 718 AGGATTTGATAAAGATGAGTTTTCTTCTGACTCTCAAATGGTTGTGTATGAGCCCCAAAG 777 ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 599 AGGTTTTGAGAAAGATGAGTTTTCATCTGACTCTCAAATGGTTGTGTATGAGCCTCAAAG 658 Query 778 AAAAACGCCGAATACAATG---AGGCAAACAAAGCAACAACTCGTGTATGGGACACCGAT 834 |||||| ||||||||| || ||||||| |||||||||| ||||||||||||||||||| Sbjct 659 AAAAACCCCGAATACATTGTTGAGGCAAAAAAAGCAACAAATCGTGTATGGGACACCGAT 718 Query 835 GAGGCCAAGGAAAACGACAGCATATACCCCCAAAAGGAACACA-ATCGAATATGGAACAC 893 |||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 719 GAGGCCAAGGAACACGACAGCATATACCCCCAAAAGGAACA-ATATCGAATATGGAACAC 777 Query 894 CAATGAGGTCAAGACCAATCGTTATTACAGAATCTGACTTAGGTCCTTCAGCCTCAGTAG 953 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 778 CAATGAGGTCAAGACCAATCGTTATTACAGAATCTGATTTAGGTCCTTCAGCCTCAGTGG 837 Query 954 TTGCTGCCCAAATAGCAAAAGAGAAAGCACTTACAGGGAAAGATGCGGAGAGTACTGTGA 1013 ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| Sbjct 838 TTGCTGCCCAAATAGCAAAAGAGAAGGCACTCACAGGGAAAGATGCTGAGAGTACTGTGA 897 Query 1014 TAAGTGTTGGTGAACGAAGTGTCGAGGGTCTTCGTTCTAAGTTAGAAAGATGGCAAGCCA 1073 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| Sbjct 898 TAAGTGTTGGTGAACGAAGCGTCGAGGGTCTTCGTTCTAAGCTAGAAAGGTGGCAAGCCA 957 Query 1074 ATTTACCAGTGGTTTTAGACGTGGGGTCAAGTTATCAACCAAGTTCTGACTACAAAACAA 1133 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 958 ATCTACCAGTGGTTTTAGACGTGGGTTCAAGTTATCAACCAAGTTCTGACTACAAAACAA 1017 Query 1134 ACTCTAACTTTAACCCTAAATCAAGTTACAAGCCTAACGAAATCGTCCCAAGAAATCCTC 1193 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 1018 ACTCTAACTTTAACCCTAAATCAAGTTACAAGCCCAATGAAATCGTGCCAAGAAATCCTC 1077 Query 1194 AAATGATTGGAGCTCCCATCCAAAAGCCAAGTGGGAGGAACAAGAAAAGTGGAGATAACG 1253 | ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| | Sbjct 1078 AGATGATTGGAGCTCCCATCCAAAAGCAAAGTGGGAGGAACAAGAAAGGAGGAGATAATG 1137 Query 1254 GATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCT 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 GATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCT 1197 Query 1314 CTAGTGGACAAAAAGCAGCCaagaagaagaagaaaaagaagTGATAAA-TAACAAACA-T 1371 |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| | Sbjct 1198 CTAGTGGACAAAAAGCAGCCAAGAAGAAGAAGAAAAAGAAGTGAAAAACTT-CAAACACT 1256 Query 1372 GATTCCTTCAATTCTAAATGATTCATTTCTCATTATGTTTCTATTTTTCAAGCTTGTCGA 1431 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 -ATTCCTTCAATTCTAAATGATTCATTTCTCATTATGTTTCTATTTTTCAAGCTTGTCGA 1315 Query 1432 TTTTGCTACTCAATAATCCAAATTTATA-TAGTAAGACA 1469 |||||||||||||||||| ||||||||| |||||||||| Sbjct 1316 TTTTGCTACTCAATAATC-AAATTTATAATAGTAAGACA 1353 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55764118680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5