BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13360.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480305 jgi|Araly1|480305|fgenesh2_kg.3__3006__AT2G13360.2 2366 0.0
> Ahg480305 jgi|Araly1|480305|fgenesh2_kg.3__3006__AT2G13360.2
Length=1514
Score = 2366 bits (1281), Expect = 0.0
Identities = 1449/1529 (95%), Gaps = 16/1529 (1%)
Strand=Plus/Plus
Query 6 CATGTAATTtaaaataaataaataaaataaaaaaaagaaaaaGAAGAAGATATATTAAAG 65
||||||||| ||||||||||||| ||| ||||| ||||| || |||||||| |||||
Sbjct 1 CATGTAATTGAAAATAAATAAAT-TAAT--TAAAAA-AAAAA-AA-AAGATATAGTAAAG 54
Query 66 AGGTTTGTGAAGACGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGT 125
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 55 AGGTTTGTGAAGACGAAGGAGTCCAAAA-ATCCCTCAGGAGCTTCCGCCTTATTCAGAG- 112
Query 126 GTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGAC 185
| | ||||||| | ||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 113 G-A-AGGAGGAGCAAAAAGAACA-AGG-AAAAATGGACTATATGTATGGACCAGGGAGAC 168
Query 186 ACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTAATCCGGGCGATGAACC 245
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 169 ACCATCTGTTTGTGCCTGGACCAGTGAACATACCAGAACCGGTAATCCGGGCGATGAACC 228
Query 246 GGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCGCTTACGAAAACATTGTTGGAGG 305
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 229 GGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCTCTTACAAAAACATTGTTGGAGG 288
Query 306 ATGTTAAGAAGATATTCAAGACCACATCAGGGACACCTTTTCTGTTTCCCACGACCGGGA 365
|||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||
Sbjct 289 ATGTGAAGAAGATATTCAAGACCACATCTGGGACACCGTTTCTGTTTCCCACAACAGGGA 348
Query 366 CTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGT 408
Query 426 TTCTGATTGGACAATTTAGCTTGCTCTGGATTGACCAGCAGAAGAGGCTTAATTTCAATG 485
|||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 409 TTCTCATCGGACAATTTAGCTTGCTCTGGATTGACCAACAGAAGAGGCTAAATTTCAATG 468
Query 486 TTGATGTGGTTGAGAGTGATTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGC 545
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 TTGATGTGGTTGAGAGTGAGTGGGGACAAGGTGCTAATCTCCAAGTCTTAGCCTCAAAGC 528
Query 546 TCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGA 588
Query 606 CCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGATCACTACAAGCATCCGG 665
||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 589 CCGGAGTCACTAATGACATCTCTGCTGTCCGCACACTCCTTGATCACTACAAGCACCCGG 648
Query 666 CTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTGCGCGCTTGATTTCCGAATGGATGAGT 725
|||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||
Sbjct 649 CTTTGCTGCTAGTGGACGGTGTCTCGTCCATTTGTGCGATTGATTTCCGAATGGATGAGT 708
Query 726 GGGGAGTGGACGTGGCCTTGACTGGGTCTCAGAAAGCCTTATCTCTTCCAACAGGACTTG 785
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 709 GGGGAGTGGACGTGGCCTTGACCGGCTCTCAGAAAGCCTTGTCTCTTCCAACAGGACTTG 768
Query 786 GTATTGTCTGCGCCAGTCCTAAAGCTTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAG 845
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 GTATTGTGTGCGCCAGTCCTAAAGCCTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAG 828
Query 846 TATTCTTTGACTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACCTATTGGCCATACA 905
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 829 TATTCTTTGATTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACATATTGGCCTTACA 888
Query 906 CACCTTCCATTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAG 965
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 889 CACCTTCCATTCAACTCCTCTACGGTCTTAGAGCTGCTCTTGATCTTATATTTGAGGAAG 948
Query 966 GACTTGAGAACATCATCGCCCGCCATGCTCGT-TTGGGAAAGGCCACCAGGCTTGCGGTG 1024
|||||||||| |||||||| || |||||||| |||| ||||||||||||||||||||||
Sbjct 949 GACTTGAGAATATCATCGCGCGGAATGCTCGTCTTGG-AAAGGCCACCAGGCTTGCGGTG 1007
Query 1025 GAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACA 1084
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1008 GAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAGTGGATAAGTAACACTGTCACC 1067
Query 1085 GCAGTTATGGTGCCTCCGCATATAGACGGTTCGGAGATTGTGAGAAGGGCATGGCAGAGG 1144
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1068 GCAGTTATGGTGCCTCCGCATATAGACAGTTCGGAGATTGTGAGAAGGGCATGGAAGAGG 1127
Query 1145 TACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGA 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGA 1187
Query 1205 CACCTAGGAAATGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATA 1264
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CATCTAGGAAACGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATA 1247
Query 1265 CTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTAT 1324
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1248 CTGAAGGATGTTGGGTACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCTTCTACTTAT 1307
Query 1325 CTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATGTGGTCcttctctttc 1384
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1308 CTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATTTG-TCCCTCTCTTTC 1366
Query 1385 tttctcttcctctcaatgtaaacaaactctcatgttttctcttttcttcatctATATTTT 1444
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||
Sbjct 1367 TTTCTCTTCCTCTCAATGTAAACAA-CTCTCATGCTTTCTCTTTTCTCCATCTATATCTT 1425
Query 1445 TACTACATTATCTATGTTTTTATTTGCTATCTCCAACAAACTTATTGAACAAAAGATCAA 1504
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1426 TACTACATTATCTATGTTTTTATTTGCTATCTCCAACAAACTTATTAAACAAAAGGTCAA 1485
Query 1505 ATATGTTTATTACTCACTATAAACTTTGT 1533
|||||||||||||||||||| ||||||||
Sbjct 1486 ATATGTTTATTACTCACTATTAACTTTGT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5