BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G13542.1 Length=231 Score E Sequences producing significant alignments: (Bits) Value Ahg931095 jgi|Araly1|931095|scaffold_303552.1 222 7e-58 > Ahg931095 jgi|Araly1|931095|scaffold_303552.1 Length=300 Score = 222 bits (120), Expect = 7e-58 Identities = 144/156 (92%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 70 ATCCAACAATATGATCGTTGCATTGGGCCATGTTTGAGATTTTACGGAAATCATCAATGT 129 ||||| |||||||||||||||| |||| |||||| |||||||||||||||||| |||||| Sbjct 111 ATCCAGCAATATGATCGTTGCACTGGGGCATGTTCGAGATTTTACGGAAATCAGCAATGT 170 Query 130 TACAAAAACTGTAGAAAGGCGAAGTATGATGGAGGACAGTGTGATTTTGTTAAAAAAGGT 189 ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 171 TACGAAAACTGTAGAAAGGTGAAGTATGATGGAGGACAGTGTGATTTTGTTACAAAAGGT 230 Query 190 GAAAAATTACCAGAATGTTGTTGCTATTATAACAAA 225 ||||| |||||||||||||||||||| || || ||| Sbjct 231 GAAAATTTACCAGAATGTTGTTGCTACTACAATAAA 266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7943158288 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5