BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G13542.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931095 jgi|Araly1|931095|scaffold_303552.1                        222    7e-58


> Ahg931095 jgi|Araly1|931095|scaffold_303552.1
Length=300

 Score =  222 bits (120),  Expect = 7e-58
 Identities = 144/156 (92%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  70   ATCCAACAATATGATCGTTGCATTGGGCCATGTTTGAGATTTTACGGAAATCATCAATGT  129
            ||||| |||||||||||||||| |||| |||||| |||||||||||||||||| ||||||
Sbjct  111  ATCCAGCAATATGATCGTTGCACTGGGGCATGTTCGAGATTTTACGGAAATCAGCAATGT  170

Query  130  TACAAAAACTGTAGAAAGGCGAAGTATGATGGAGGACAGTGTGATTTTGTTAAAAAAGGT  189
            ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct  171  TACGAAAACTGTAGAAAGGTGAAGTATGATGGAGGACAGTGTGATTTTGTTACAAAAGGT  230

Query  190  GAAAAATTACCAGAATGTTGTTGCTATTATAACAAA  225
            ||||| |||||||||||||||||||| || || |||
Sbjct  231  GAAAATTTACCAGAATGTTGTTGCTACTACAATAAA  266



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5