BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13570.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931100 jgi|Araly1|931100|scaffold_303557.1 959 0.0
> Ahg931100 jgi|Araly1|931100|scaffold_303557.1
Length=682
Score = 959 bits (519), Expect = 0.0
Identities = 618/660 (94%), Gaps = 30/660 (5%)
Strand=Plus/Plus
Query 1 ATGACTGAGGAGAGCCCAGAAGAAGATCATGGGTCTCCTGGAGTAGCTGAAACAAATCCA 60
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 21 ATGACTGAGGAGAGCCCAGAAGAGGATCATGGGTCTCC------AGCCGAAACAAATCCA 74
Query 61 GGAAGCCCTTCTTCAAAGACcaacaacaacaacaacaacaacaaagaacaaGACCGGTTT 120
|||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 75 GGAAGCCCTTCTTCAAAG----------AC--CAACAACAACAAAGAACAAGACCGGTTT 122
Query 121 CTTCCCATTGCGAATGTCGGAAGGATCATGAAAAAAGTTCTTCCCGGTAACGGTAAGATC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CTTCCCATTGCAAATGTCGGAAGGATCATGAAAAAAGTTCTTCCCGGTAACGGTAAGATC 182
Query 181 TCAAAAGACGCTAAAGAAACCGTTCAAGAATGTGTCTCGGAGTTCATTAGTTTCGTCACT 240
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 183 TCAAAAGACGCCAAAGAAACCGTTCAAGAATGTGTCTCAGAGTTCATTAGTTTTGTCACT 242
Query 241 GGTGAAGCTTCTGACAAGTGTCAAAGAGAAAAGAGGAAGACCATCAATGGAGATGATATC 300
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 243 GGTGAAGCTTCTGATAAGTGTCAAAGAGAGAAGAGGAAGACCATCAATGGAGATGATATC 302
Query 301 ATTTGGGCTATCACAACTCTCGGTTTCGAAGACTACGTGGCTCCATTAAAGGTCTACCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATTTGGGCTATCACAACTCTCGGTTTCGAAGACTACGTGGCTCCATTAAAGGTCTACCTC 362
Query 361 TGCAAATATAGAGACACCGAAGGAGAGAAAGTTaacagcccaaaacaacaacaacaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGCAAATATAGAGACACCGAAGGAGAGAAAGTTAACAGCCCAAAACAACAACAACAAAGA 422
Query 421 caacaacaacagca---------gattcaacaacaGAATCATCATAATTATCAGTTTCAA 471
||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 423 CAACAACAACAACAACAACAACAGATTCAACAACAGAATCATCATAATTATCAGTTTCAA 482
Query 472 GAACAAGACCAAAACAATAACAACATGTCATGTACTAGTTACATCTCTCATCATCATCCT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GAACAAGACCAAAACAATAACAACATGTCATGTACTAGTTACATCTCTCATCATCATCCT 542
Query 532 TCTCCATTCCTACCAGTGGATCATCAACCTTTTCCCAATATTGCTTTCTCTCCTAAATCA 591
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 543 TCTCCATTCCTACCGGTGGATCATCAACCATTTCCCAATATTGCTTTCTCTCCTAAATCA 602
Query 592 TTGCAGAAACAGTTCCCGCAGCAGCA---TGATAATAACATTGATTCAATTCACTGGTGA 648
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 603 TTGCAGAAACAGTTCCCGCAGCAGCAGCATGATAATAACATTGATTCCATTCACTGGTGA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5