BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13610.1
Length=2144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480313 jgi|Araly1|480313|fgenesh2_kg.3__3014__AT2G13610.1 3358 0.0
> Ahg480313 jgi|Araly1|480313|fgenesh2_kg.3__3014__AT2G13610.1
Length=2121
Score = 3358 bits (1818), Expect = 0.0
Identities = 2024/2125 (95%), Gaps = 8/2125 (0%)
Strand=Plus/Plus
Query 24 AAAGAAAGAGAGAGAACAAAGCTTCTTCATCAATGGAGAAGCAAGGATGTGAGATCGAAG 83
||||| ||||||||||||||| |||||| |||||||||||| |||| |||||||| ||||
Sbjct 1 AAAGAGAGAGAGAGAACAAAGATTCTTCTTCAATGGAGAAGGAAGGGTGTGAGATTGAAG 60
Query 84 CTTTAGATATTGATTACAACATCTTTGTAAGGAAGATTAATGTTAATCCCTTT-GGAATC 142
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 61 CTTTAGATATTGATTACAACATCTTTGTAAGGAAGTTTAATGTTAAT-CCTTTCGGAATC 119
Query 143 TTTAGGCGGAAACCGCGGCCGGAAGCTGACCAGCCGGTAAAGACAGAGGAAGAGTCATTG 202
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
Sbjct 120 TTTAGGCGGAAACCGCGGCCGGAAGCTGACCAGCCGGTTAAGACGGAAGAAGAGTCATGG 179
Query 203 AAGCTAGAGGATGAAACCGGTAACAAAGTCAAGCATGTACTAAAAGGAGTGACTTGCAGA 262
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGCTAGAGGATGAAACCGGCAACAAAGTCAAGCATGTACTAAAAGGAGTGACTTGCAGA 239
Query 263 GCCAAACCATGGGAGATTCTTGCTATTGTTGGCCCAAGTGGTGCAGGGAAGTCGTCTTTG 322
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 240 GCCAAACCATGGGAGATTCTTGCTATTGTTGGCCCAAGTGGCGCAGGGAAGTCTTCTTTG 299
Query 323 CTTGAAATTCTAGCTGCTAGACTCATCCCTCAAACCGGGTCGGTTTATGTCAACAAGAGA 382
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 CTTGAAATTCTAGCTGCTAGACTCATCCCTCAAACCGGGTCGGTTTTTGTCAACAAGAGA 359
Query 383 CCGGTGGATAGAGCCAATTTCAAGAAAATCTCTGGTTATGTCACTCAGAAGGATACTCTG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 CCGGTGGATAGAGCCAATTTCAAGAAAATCTCTGGTTATGTCACTCAGAAGGACACTCTG 419
Query 443 TTTCCTTTGCTTACGGTGGAGGAAACCCTTCTGTTCAGTGCTAAGCTGCGTTTAAAGCTC 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTCCTTTGCTTACGGTGGAGGAAACCCTTCTGTTCAGTGCTAAGCTGCGTTTAAAGCTC 479
Query 503 CCTGCAGATGAACTGAGATCACGGGTTAAGTCTTTGGTCCATGAGCTTGGGCTTGAAGCT 562
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 480 CCTGCAGATGAACTGAGATCACGGGTTAAGTCGTTGGTCCATGAGCTTGGGCTAGAAGCT 539
Query 563 GTTGCCACGGCTCGTGTTGGCGATGATAGTGTCAGAGGTATATCGGGTGGAGAGAGACGT 622
||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GTTGCTAAGGCTCGTGTTGGCGATGATAGTGTCAGAGGGATATCGGGTGGAGAGAGACGC 599
Query 623 CGTGTCTCCATAGGAGTTGAAGTTATTCACGACCCCAAAGTTCTGATCCTTGATGAACCA 682
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 CGTGTCTCCATAGGAGTTGAAGTTATTCACGACCCCAAAGTTCTGATCCTTGATGAGCCA 659
Query 683 ACCTCTGGGCTTGATAGTACTTCGGCTCTGCTGATCATAGACATGCTCAAACACATGGCT 742
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 ACCTCTGGTCTTGATAGTACTTCGGCTCTGCTGATCATAGACATGCTCAAGCACATGGCT 719
Query 743 GAAACACGAGGCAGGACCATAATTCTGACTATCCACCAACCGGGATTTCGGATAGTCAAA 802
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 720 GAAACACGAGGCAGGACCATAATTCTGAGTATCCATCAACCGGGATTTCGGATAGTCAAA 779
Query 803 CAGTTCAATTCTGTTCTCTTGTTGGCCAATGGCTCGACCTTGAAGCAGGGGTCGGTGGAT 862
||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||||||
Sbjct 780 CAGTTCAATTCTGTTCTTTTGTTGGCCAATGGTTCGACGTTGAAGCAAGGCTCGGTGGAT 839
Query 863 CAGCTTGGCGT-TTACTTAAGGTCAAATGGTTTGCACCCTCCTCTCCATGAAAACATCGT 921
||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 CAGCTTGGCGTGTTT-TTAAGGTCAAATGATTTGCACCCTCCTCTCCATGAAAACATCGT 898
Query 922 TGAATTTGCCATTGAATCAATCGAATCCATCACAAAACAGCAACGGCTACAGGAAAGCAG 981
||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 899 AGAATTCGCCATTGAATCAATCGAAGCAATCACAAAACAGCAACGGCTACAGGAAAGCAG 958
Query 982 AAGAGCAGCTCATGTCCTAACACCACAAACAACATTACAAGAGAAGAGATCAGAAGATAG 1041
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGAGCAGCTCATGTTCTAACATCACAAACAACATTACAAGAGAAGAGATCAGAAGATAG 1018
Query 1042 TCAAGGGGAGAGCAAAAGTGGCAAATTCACACTACAACAGCTGTTTCAACAAACAAGGGT 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCAAGGGGAGAGCAAAAGTGGCAAATTCACACTACAACAGCTGTTTCAACAAACAAGGGT 1078
Query 1102 CGCTGATGTAGGAACGATGAACATAGCAACAGAGTTCACAAGAGATTTTGCAAATTCAAG 1161
||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1079 TGCTGATGTAGGAAGGATGAACATAGCAACGGAGTTCACCAGAGATTTTGCAAATTCAAG 1138
Query 1162 ATTAGAAGAAACTATGATACTCACACATAGGTTCTCCAAGAACATTTTCAGAACCAAGGA 1221
| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1139 ACTAGAAGAAACTATGATACTCACCCATAGGTTCTCCAAGAACATATTCAGAACCAAAGA 1198
Query 1222 GCTTTTTGCGTGCAGGACGGTTCAGATGTTAGGTTCAGGAATTGTCCTAGGTCTGATTTT 1281
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1199 GCTTTTTGCGTGCAGGACGGTTCAGATGTTAGGTTCAGGGATTGTTCTAGGTCTGATTTT 1258
Query 1282 TCATAATCTCAAAGACGATTTAAAAGGTGCGCGAGAAAGAGTCGGCCTCTTTGCATTCAT 1341
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 TCATAATCTCAAAGACGATTTAAAAGGTGCACGAGAAAGAGTCGGCCTCTTTGCATTCAT 1318
Query 1342 ATTGACCTTTCTGCTAACTTCGACAATAGAGGCACTCCCTATATTTCTGCAAGAAAGAGA 1401
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1319 ATTGACCTTCCTGCTAACTTCAACAATAGAGGCACTCCCTATATTTCTGCAAGAGAGAGA 1378
Query 1402 GATTCTGATGAAGGAGACCTCTAGTGGAAGCTACAGAGTGTCTTCATATGCCGTCGCTAA 1461
||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1379 GATTCTGATGAAGGAAATATCTAGTGGAAGCTACAGAGTGTCGTCATATGCCATCGCTAA 1438
Query 1462 TGGACTAGTTTACTTGCCATTTCTGCTCATCCTAGCTATTCTATTCTCAAC-CCCAGTGT 1520
||| || |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1439 TGGGCTTGTTTACTTGCCATTTCTGCTCATCCTAGCTATTCTATTCTCA-CTCCCAGTGT 1497
Query 1521 ACTGGCTGGTGGGACTGAACCCCAGTTTCATGGCGTTTCTACACTTTTCGCTCCTCATTT 1580
|||||||||||||||||||||| | ||||||||| ||||| ||||||| |||||| ||||
Sbjct 1498 ACTGGCTGGTGGGACTGAACCCTAATTTCATGGCATTTCTGCACTTTTTGCTCCTAATTT 1557
Query 1581 GGTTGATCCTCTACACAGCAAACTCGGTGGTTGTGTGCTTTAGTGCACTGGTTCCTAATT 1640
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1558 GGTTGATCCTCTACACAGCAAACTCAGTGGTTGTGTGCTTTAGTGCGCTGGTTCCTAATT 1617
Query 1641 TCATAGTTGGAAACTCAGTGATTTCCGGTGTGATGGGTTCCTTCTTTCTGTTCTCCGGCT 1700
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1618 TCATTGTTGGAAATTCAGTGATTTCCGGTGTGATGGGTTCCTTCTTTCTGTTCTCCGGAT 1677
Query 1701 ACTTCATATCGAACCATGAGATCCCTGGTTACTGGATTTTCATGCACTACATCTCCTTGT 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ACTTCATATCGAACCATGAGATCCCTGGTTACTGGATTTTCATGCACTACATCTCCTTGT 1737
Query 1761 TCAAGTACCCGTTCGAAGGATTTCTGATTAACGAGTTCTCAAAATCAAACAAGTGTTTGG 1820
||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 1738 TCAAGTATCCGTTTGAAGGATTTCTGATTAACGAGTTCTCCAAGTCAAGCAAGTGTTTGG 1797
Query 1821 AGTATGGATTCGGAAAATGTTTGGTGACTGAGGAGGATCTACTCAAAGAAGAAAGGTACG 1880
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
Sbjct 1798 AGTATGGATTCGGAAAATGCTTGGTGACCGAGGAGGATCTACTAAAAGAAGAAAGGTATG 1857
Query 1881 GAGAGGAAAGTAGATGGAGAAATGTTGTGATCATGCTATGTTTTGTCTTGCTCTACAGGT 1940
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GAGAGGAAAACAGATGGAGGAATGTTGTGATCATGCTATGTTTTGTCTTGCTCTACAGGT 1917
Query 1941 TCATTTCCTATGTGATTCTGAGGTGTAGATGTTCCCAACGAAGTTTCAAAACCACTCTCG 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1918 TCATTTCCTATGTGATTCTGAGGTGTAGATGTTCCCAACGAAGTTTCAAAACCGCTCTTG 1977
Query 2001 CTTAATAAATGTGGTAGCAATAATGTCCTTTCTGAAAAACATTGGGTTACAGGTTTGTTC 2060
||||| ||||||| || |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1978 CTTAACAAATGTGTTAACAATAATGTCTTTTCTGCAAAACATTGGGTTACAGGTTTGTTC 2037
Query 2061 ATGTGTTTAATTATTTACTTCGTACAGCAACCGAAGATGTGAAAGAAAATGTTGTTTCTG 2120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2038 ATGTGTTTAATTATTTACTTCGTACAGCAACCGAAGATGTGAAAGAAAACGTTGTTTATG 2097
Query 2121 CAAAATGAAA-TTTCCATTGATTCT 2144
||||| |||| ||||||||||||||
Sbjct 2098 CAAAA-GAAAATTTCCATTGATTCT 2121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80675138910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5