BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13620.1
Length=2466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480314 jgi|Araly1|480314|fgenesh2_kg.3__3015__AT2G13620.1 3751 0.0
> Ahg480314 jgi|Araly1|480314|fgenesh2_kg.3__3015__AT2G13620.1
Length=2472
Score = 3751 bits (2031), Expect = 0.0
Identities = 2329/2475 (94%), Gaps = 12/2475 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACAAGTGAAGAACCTAGTACGGATGCCTCCATAATATGTTATGCGCCAAGCATG 60
|||||||||||||| ||| |||||| ||| |||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGACAAGTGAGGAAAATAGTACAGATACCTCCATAATATGTTACGCGCCAAGCATG 60
Query 61 ATCACCACCAATGGTGTTTGGCAAGGCGATAATCCTCTCGACTTT-TCGCTACCTCTCTT 119
|||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 61 ATCACCACCAATGGAGTTTGGCAAGGCGATAATCCTCTCGA-TTTCTCGCTACCGCTCTT 119
Query 120 TGTTCTTCAGCTAACTTTGGTTGTTGTCGTCACTCGTTTCTTCGTCTTTATCCTCAAACC 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TGTTCTTCAGCTAACCTTGGTTGTTGTCGTCACTCGTTTCTTCGTCTTTATCCTCAAGCC 179
Query 180 CTTTCGCCAACCTCGTGTCATCTCCGAGATCCTTGGCGGAATTGTTCTTGGACCATCGGT 239
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 180 CTTTCGCCAACCTCGTGTTATCTCCGAGATCCTTGGTGGAATTGTTCTTGGGCCATCGGT 239
Query 240 GCTAGGGCGCTCCACAAAATTTGCACACACTATTTTCCCTCAAAGAAGTGTGATGGTACT 299
||| ||||| | | | |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 240 GCTTGGGCGGTACGCGAAATTTGCGCACACAATCTTCCCTCAAAGAAGTGTGATGGTACT 299
Query 300 TGAAACAATGGCTAATGTGGGTTTACTTTACTTCCTATTCTTGGTGGGTGTAGAGATGGA 359
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GGAAACAATGGCTAATGTGGGTTTACTTTACTTCCTTTTCTTGGTGGGTGTAGAGATGGA 359
Query 360 CATTATGGTTGTACGTAAGACAGGGAAGCGAGCCCTAACCATCGCTATTGGTGGTATGGT 419
||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CATCATGGTGGTTCGTAAGACAGGGAAGCGAGCCTTAACCATCGCTATTGGTGGTATGGT 419
Query 420 TTTACCATTCCTCATTGGTGCTGCCTTCTCTTTCTCTATGCATAGATCAGAAGACCACTT 479
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CTTACCATTCCTCATTGGTGCTGCTTTCTCTTTCTCTATGCATAGATCAGAAGACCACTT 479
Query 480 AGGGCAAGGCACCTATATACTTTTCCTTGGTGTTGCACTCTCCGTTACTGCATTCCCGGT 539
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GGGGCAAGGTACCTACATACTTTTCCTCGGTGTTGCACTCTCCGTTACTGCATTCCCGGT 539
Query 540 TCTTGCAAGAATTCTTGCTGAGCTCAAGCTCATCAATACCGAGATTGGGCGGATATCGAT 599
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTGCGAGGATTCTTGCTGAGCTCAAGCTCATCAATACCGAGATTGGGCGGATATCGAT 599
Query 600 GTCTGCAGCTTTAGTTAACGACATGTTCGCTTGGATTCTTTTGGCCTTAGCTATTGCATT 659
||||||||| ||||||||||| ||||| |||||||||||| | ||||||||||| || ||
Sbjct 600 GTCTGCAGCCTTAGTTAACGATATGTTTGCTTGGATTCTTCTAGCCTTAGCTATCGCGTT 659
Query 660 GGCTGAGAGTGACAAAACTTCATTTGCCTCTCTTTGGGTTATGATCTCTAGTGCAGTTTT 719
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 660 GGCTGAGAGTGACAAAACTTCATTTGCCTCCCTTTGGGTCATGATCTCTAGTGCAGTTTT 719
Query 720 CATTGCCGTTTGTGTTTTTGTTGTGAGACCAGGCATTGCTTGGATCATACGTAAAACCCC 779
||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATCGCCATTTGCGTCTTTGTTGTGAGACCAGGCATTGCTTGGATCATACGTAAAACCCC 779
Query 780 TGAAGGAGAGAA-TTTCAGTGAGTTCCACATATGCCTAATCTTGACAGGAGTTATGATCT 838
|||||||||||| ||| ||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 780 TGAAGGAGAGAACTTT-AGTGAGTTCTATATATGCTTAATCTTGACAGGAGTTATGATCT 838
Query 839 CCGGTTTCATTACTGATGCAATCGGAACACATTCAGTCTTTGGTGCTTTTGTGTTTGGTC 898
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 CTGGTTTCATTACCGATGCAATCGGAACACATTCAGTCTTTGGGGCTTTTGTGTTTGGTC 898
Query 899 TTGTGATTCCCAATGGACCTCTTGGTCTAACCCTCATTGAGAAGCTTGAAGATTTCGTCT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGTGATTCCCAATGGACCTCTTGGTCTAACCCTCATTGAGAAGCTTGAAGATTTCGTCT 958
Query 959 CTGGCCTTCTCCTACCTCTCTTCTTTGCCATAAGTGGTCTCAAGACTAATATAGCTGCCA 1018
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 959 CTGGCCTTCTCTTACCTCTCTTCTTTGCCATAAGTGGTCTCAAAACTAATGTAGCTGCCA 1018
Query 1019 TTCAAGGCCCTGCCACGTGGTTAACTCTGTTTCTTGTCATTTTCCTCGCTTGTGCTGGAA 1078
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1019 TTCAAGGCCCTGCCACGTGGTTAACTCTGTTTCTTGTTATTTTCCTCGCTTGTGCTGGAA 1078
Query 1079 AGGTCATCGGTACAGTTATTGTTGCGTTTTTCCATGGAATGCCAGTTCGTGAAGGAATCA 1138
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1079 AAGTTATCGGTACAGTTATTGTTGCGTTTTTCCATGGAATGCCGGTTCGTGAAGGAATCA 1138
Query 1139 CTCTTGGACTACTCTTGAACACTAAAGGTCTTGTTGAAATGATTGTACTTAATGTTGGAA 1198
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 CTCTTGGCCTACTCTTGAACACTAAAGGTCTTGTTGAAATGATTGTGCTTAATGTTGGAA 1198
Query 1199 AAGACCAAAAGGTTTTGGATGATGAGACATTTGCTACTATGGTACTTGTGGCCTTGGTTA 1258
|||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||
Sbjct 1199 AAGACCAAAAGGTTTTGGATGACGAAACATTTGCTACCATGGTTCTTGTGGCCTTAGTTA 1258
Query 1259 TGACTGGAGTCATTACTCCTATTGTAACAATCCTTTACAAGCCAGTGAAGAAATCTGTTT 1318
||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 TGACTGGAGTCATCACCCCTATTGTAACAGTCCTTTACAAGCCAGTGAAGAAATCTGTTT 1318
Query 1319 CATACAAGAGACGAACAATCCAACAAACGAAGCCAGACAGCGAGCTTCGGGTATTGGTTT 1378
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1319 CATACAAGAGACGGACAATCCAACAGACGAAGCCAGACAGCGAGCTTCGAGTATTGGTTT 1378
Query 1379 GCGTTCACACACCGCGTAATGTTCCTACTATAATTAACCTTCTTGAAGCTTCACATCCCA 1438
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1379 GTGTTCACACACCGCGTAATGTTCCTACTATAATCAACCTTCTTGAAGCTTCATATCCCA 1438
Query 1439 CAAAGAGATCTCCTATATGCATCTACGTTCTCCACCTTGTTGAGCTCACGGGCCGCGCAT 1498
||||||||||||| ||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct 1439 CAAAGAGATCTCCCATATGTATCTACGTTCTCCATCTAGTTGAGCTCACGGGTCGAGCAT 1498
Query 1499 CCGCGATGTTGATTGTCCACAACACTCGTAAGTCAGGACGACCCGCGCTTAACAGAACTC 1558
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CCGCAATGCTAATTGTCCACAACACTCGTAAGTCAGGACGACCCGCGCTTAACAGAACTC 1558
Query 1559 AAGCTCAATCAGATCATATCATCAACGCCTTTGAGAACTATGAACAACACGCTGCCTTTG 1618
||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 1559 AAGCTCAGTCAGATCATATCATCAACGCCTTCGAAAACTATGAACAACATGCTGCATTTG 1618
Query 1619 TCGCTGTACAACCTTTAACAGCTATTTCACCTTACTCAACAATGCATGAAGATGTTTGTA 1678
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TCGCTGTTCAACCGTTAACAGCTATTTCACCTTACTCAACAATGCATGAAGATGTTTGTA 1678
Query 1679 GCTTAGCAGAGGACAAACGTGTCTCCTTCATAATCATACCATTTCACAAACAACAAACAG 1738
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1679 GCTTAGCTGAGGACAAACGTGTCTCCTTCATCATCATACCATTTCACAAACAACAAACAG 1738
Query 1739 TTGATGGAGGAATGGAATCAACCAACCCGGCCTACCGTTTAGTCAACCAAAACCTACTCG 1798
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TTGATGGAGGAATGGAATCCACCAACCCGGCCTACCGTTTAGTCAACCAAAACCTACTCG 1798
Query 1799 AAAACTCGCCTTGTTCGGTCGGAATACTCGTGGATAGAGGACTCAATGGAGCGACAAGAC 1858
|||||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||
Sbjct 1799 AAAACTCGCCTTGTTCCGTTGGAATACTCGTGGACAGAGGACTTAATGGAGCCACAAGAC 1858
Query 1859 TCAACTCAAACACTGTTTCTCTTCAAGTTGCTGTTCTGTTTTTCGGCGGTCCAGACGATA 1918
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1859 TCAACTCAAACACCGTCTCTCTCCAAGTTGCTGTTCTGTTTTTCGGCGGTCCAGACGATA 1918
Query 1919 GAGAAGCTTTGGCTTATGCATGGAGAATGGCTCAACATCCTGGCATCACTCTAACTGTTT 1978
|||||||||| || ||||| ||||||||||| |||||||| ||||| ||| |||| ||||
Sbjct 1919 GAGAAGCTTTAGCCTATGCTTGGAGAATGGCCCAACATCCGGGCATTACTTTAACCGTTT 1978
Query 1979 TACGGTTCATTCATGATGAAGATGAAGCAGACACAGCTTCAACACGAGCGACCAATGACA 2038
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1979 TGCGGTTCATTCATGATGAAGATGAAGCAGACACAGCTTCAACACGTGCGACAAATGACA 2038
Query 2039 GTGACCTAAAGATACCAAAGATG-----G-ACCATAGAAAACAAAGACAACTTGATGATG 2092
||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 2039 GTGACCTAAAGATACCAAAGATGAACATGGACCATAAAAAACAAAGACAACTTGATGATG 2098
Query 2093 ACTACATTAATCTCTTTAGGGCAGAAAATGCGGAAT-ACGAGTCAATTGTGTATATAGAA 2151
||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 2099 ACTACATAAATCTCTTTAGGGCGGAAAATGCGGAATTA-GAGTCAATTGTGTATATAGAA 2157
Query 2152 AAACTAGTGAGCAATGGGGAAGAGACTGTTGCAGCAGTGAGATCAATGGACAGTTCTCAT 2211
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 2158 AAACTAGTGAGCAATGGGGAAGAGACGGTTGCAGCAGTAAGATCAATGGATAGTTCTCAT 2217
Query 2212 GATTTGTTTATAGTTGGAAGAGGAGAAGGAATGTCGTCTCCTCTTACCGCGGGTTTAACT 2271
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2218 GATCTGTTTATTGTTGGAAGAGGAGAAGGAATGTCGTCTCCTCTCACCGCGGGTTTAACC 2277
Query 2272 GATTGGAGTGAGTGTCCTGAGCTTGGTGCCATTGGAGATTTGCTTGCTTCATCAGACTTT 2331
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 GATTGGAGCGAGTGTCCCGAGCTTGGTGCCATTGGAGATTTGCTTGCTTCATCAGACTTT 2337
Query 2332 GCAGCTACTGTGTCGGTTCTTGTGGTTCAACAGTATGTTGGGTCATGGGCACAAGAAGAT 2391
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2338 GCAGCCACTGTGTCGGTTCTTGTGGTTCAGCAGTATGTTGGGTCATGGGCACAAGGAGAC 2397
Query 2392 GATATGGATTTTCCTGAGAGTCCAGTACATTCACATGAAACAAAAGTCACATATGGTTTA 2451
|| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2398 GACATGGATTTTCCTGAGAGTCCAGTACATTCACATGAAACAAAAGCCATATATGGTTTA 2457
Query 2452 GAGAATCCACGTTAG 2466
|||||||||||||||
Sbjct 2458 GAGAATCCACGTTAG 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92940197800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5