BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13630.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379 758 0.0
Ahg928019 jgi|Araly1|928019|scaffold_300476.1 195 7e-49
> Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379
Length=1272
Score = 758 bits (410), Expect = 0.0
Identities = 769/933 (82%), Gaps = 61/933 (7%)
Strand=Plus/Plus
Query 1 ATGCAGATGCAGCTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTTTAATCATCGTA-- 58
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 247 ATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCATCGTAGG 306
Query 59 CT-A-TGA-A----T---TCGGATCTAGGGTACCT-GTTTTCTCCACCCGTCGAG-GGTT 106
| | | | | | ||||||||| | || || ||||||||||||| | | | ||||
Sbjct 307 GTCAGTTATACTCTTAGCTCGGATCTACGTTA-CTGGTTTTCTCCACCCAT-GGGCGGTT 364
Query 107 TGATCTTCT-GTAGAAATAATACTAAAGCAATGATTGGAAATCCTAGTACGGGTCAGTTT 165
||||||| | || |||| ||||||||| || |||||||| |||||||||||||| ||
Sbjct 365 TGATCTT-TGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCAATTC 423
Query 166 GTATCTTTA-CT--A--C--GA-G--GAGAAAGAACATATTATCTGTTTTTGGATATGAT 215
||||||||| || | | | | ||||||| ||||||| || ||||||||||||||
Sbjct 424 GTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATATGAT 483
Query 216 CCAGTTAATGATTTGTACAAAGTGTTGTGCAAGAC-G--ACAACTAAACGTGGATCACCA 272
||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||| ||
Sbjct 484 CCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATCA-CA 542
Query 273 CGTTTTTAATTGGGAAGGTCCTATGTGGGAGGAGTCTATGTCAGAGGAGCATCAAGTTTT 332
| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 543 AGCTTTTAAGTGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAGTTTT 602
Query 333 CACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAGTATACT-CATCGTCATT 391
||| |||||| | ||||||||||||||||||||||||||| | ||| || |||||||||
Sbjct 603 CACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTAT-CTACATCGTCATC 661
Query 392 ATCCTAGATCTCAAGGGATATGCT-GGAATGGGGTTG-TGTATTATTTAGCTTCTTTCAA 449
|| || |||||||||||||||| | || |||||| || ||||||||||||||||||||||
Sbjct 662 ATTCTGGATCTCAAGGGATATG-TAGGGATGGGG-TGTTGTATTATTTAGCTTCTTTCAA 719
Query 450 CGATAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGACTTTAATGTTATTAAGCT 509
|||||| ||||| | |||| ||| |||||||| |||||||||||||||||| ||||||
Sbjct 720 GGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGCT 779
Query 510 ACTTAAGAATCATAAACTACAAGAGTATGGTAAATTGGTGGACCACACTGGAAAGATAAC 569
|| | || || ||| | ||||| ||| |||| | |||||| || | | |||||||||| |
Sbjct 780 ACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAGC 839
Query 570 TATAATGTGTCATGCAAGTA-A-TGGTCTACTTGACCTGTGGGTTCTGGAAGATGCCAAC 627
|||| || ||| || | || | |||| | | |||||||||||||| |||||||||| |
Sbjct 840 TATAGTGACTCAGGC-A-TACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGC 897
Query 628 AAAGGAGAATGGTCAACAGCTGCTGCCGTGATTCCTTCTATTGA-AGATTTAGTTGGCAA 686
|||| ||| ||||||| || ||||||||| |||||||||||| | |||| ||||||| ||
Sbjct 898 AAAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATT-ACAGATATAGTTGGGAA 956
Query 687 TCG-T-GAACA-T-GTGTTCAGTGGTATACTTGGTATTGGTGAGATTATACTTGTACCGC 742
| | | || | | | ||||||||||||||| || ||||||||||||||||| || ||
Sbjct 957 T-GATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGC 1015
Query 743 T-CCTACCTCCTAA--C-ACGtt-ttttttCCTCTGTTACGATCCTAAGGaaaaaaaTGC 797
| || ||| || || | | || |||||| |||||||||||||| ||||||||||||||
Sbjct 1016 TCCCAACC-CCCAAGCCGCCCTTCTTTTTT-CTCTGTTACGATCCCAAGGAAAAAAATGC 1073
Query 798 TAGAAAAGTTGTGATTGAAAGTATTGGAGAAG-CT--GCT-CATGTCAGGGTCTTTTTCG 853
||||||||||||||||||| | |||||||||| || ||| | |||| ||||||||||
Sbjct 1074 TAGAAAAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCG-GTCAATGTCTTTTTCG 1132
Query 854 ATTATGTAGAGAGTCATATGGTTCTGACAAAGG 886
|| ||||||||||||||||||||||| | ||||
Sbjct 1133 ATCATGTAGAGAGTCATATGGTTCTGTCCAAGG 1165
> Ahg928019 jgi|Araly1|928019|scaffold_300476.1
Length=1221
Score = 195 bits (105), Expect = 7e-49
Identities = 448/605 (74%), Gaps = 58/605 (10%)
Strand=Plus/Plus
Query 316 GAGGAGCATCAAGTTTTCACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAG 375
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 628 GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAAAATGGAGAAGGATCGAATGTAAC 687
Query 376 TAT-ACTCATCGTCATTATCCTAGATCTCAAGGGATATGC-TGGAATGGGGTTGTGTATT 433
|| | ||||| || | | || | || ||||| ||||| | || || ||||| ||||
Sbjct 688 CATGA-TCATCTTCCTCCTTCTTTAACTAAAGGGGTATGCATA-AACGGTGTTGTTTATT 745
Query 434 ATT-TAGCTTCTTTCAAC-GATAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGA 491
||| | |||| |||| | | || ||||||| || ||||| ||||||| ||||||||
Sbjct 746 ATTAT-GCTTGGATCAAAAG-TGAAGGATCTTTGATAAGCTTTGATCTGATATCTGAAGT 803
Query 492 CTTTAATGTTATTAAGCTACTTAAGAATCATAAACTACAA-GAGTATGGTAAATTGGTGG 550
|||||||| |||||| ||| | || || || | ||| | || | | || |
Sbjct 804 GTTTAATGTCATTAAGTTACCTGAGGAT-AT---C--CAATGCCTA-G-TGAACT----- 850
Query 551 ACCACACTGGAAAGATAACTATAATGTGTCAT-GCAAGTAATGGT-CTACTTGACCTGTG 608
|| | | |||||||||| || || | || | | || | | ||| | ||||||||||||
Sbjct 851 AC-A-A-TGGAAAGATAGCTTTAGCGAGTTTTTGTAAATTA-GGTAC-ACTTGACCTGTG 905
Query 609 GGTTCTGGAAGATGCCAACAAAGGAGAATGGTCAACAGCTGCTGC-CGTGATTCCTTCTA 667
||||||||||||||||| |||| ||||||||||| || | || | | || ||||||||
Sbjct 906 GGTTCTGGAAGATGCCAGCAAACAAGAATGGTCAAAAGTTTCT-CTCTTGGTTCCTTCT- 963
Query 668 TTGA-AGATTTAGTTGGCAATCGTGAA-C---ATGT---GTTCAGTGGTATACTTGGTAT 719
| || ||||||||||| || | ||| | || | | |||| |||| |||| |||
Sbjct 964 TGGACAGATTTAGTTGTTGAT-GAGAATCTTTATTTCAAGGTCAGGGGTACACTTAGTAC 1022
Query 720 TGGTGAGATTATACTTGTACCG-CTCCTACCTCCTA-ACACGtttt-ttttCCTCTGTTA 776
|| ||| ||||| || |||| ||| | || || || |||| | |||| || |||
Sbjct 1023 CGGGGAGCTTATATTTACACCGACTCGT-CCAGTTAGAC-CGTTCTATTTTA-TCAGTTT 1079
Query 777 CGATC-CTAAGGaaaaaaaTGCTAGAAAAGTTGTGATTGAAAGTA-TTGGAGA-AGCT-- 831
||||| | |||||||| | ||| | |||||||||| ||||| | | ||||||| | ||
Sbjct 1080 CGATCTC-AAGGAAAACAGTGCCAAAAAAGTTGTGGTTGAA-GAAATTGGAGATAACTTT 1137
Query 832 GCTCA-TGTC-AGGGTCTTTTTCGATTATGTAGAGAGTCATATGGTTCTGACAAAGGTAA 889
||| | | || | ||| ||||||| |||| ||||||| |||||||||| |||| ||||
Sbjct 1138 GCT-AGTCTCGAAA-TCTATTTCGATCATGTGGAGAGTCCTATGGTTCTGTCAAATGTAA 1195
Query 890 GTTAA 894
|||||
Sbjct 1196 GTTAA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5