BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G13630.1 Length=894 Score E Sequences producing significant alignments: (Bits) Value Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379 758 0.0 Ahg928019 jgi|Araly1|928019|scaffold_300476.1 195 7e-49 > Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379 Length=1272 Score = 758 bits (410), Expect = 0.0 Identities = 769/933 (82%), Gaps = 61/933 (7%) Strand=Plus/Plus Query 1 ATGCAGATGCAGCTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTTTAATCATCGTA-- 58 |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 247 ATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCATCGTAGG 306 Query 59 CT-A-TGA-A----T---TCGGATCTAGGGTACCT-GTTTTCTCCACCCGTCGAG-GGTT 106 | | | | | | ||||||||| | || || ||||||||||||| | | | |||| Sbjct 307 GTCAGTTATACTCTTAGCTCGGATCTACGTTA-CTGGTTTTCTCCACCCAT-GGGCGGTT 364 Query 107 TGATCTTCT-GTAGAAATAATACTAAAGCAATGATTGGAAATCCTAGTACGGGTCAGTTT 165 ||||||| | || |||| ||||||||| || |||||||| |||||||||||||| || Sbjct 365 TGATCTT-TGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCAATTC 423 Query 166 GTATCTTTA-CT--A--C--GA-G--GAGAAAGAACATATTATCTGTTTTTGGATATGAT 215 ||||||||| || | | | | ||||||| ||||||| || |||||||||||||| Sbjct 424 GTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATATGAT 483 Query 216 CCAGTTAATGATTTGTACAAAGTGTTGTGCAAGAC-G--ACAACTAAACGTGGATCACCA 272 ||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||| || Sbjct 484 CCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATCA-CA 542 Query 273 CGTTTTTAATTGGGAAGGTCCTATGTGGGAGGAGTCTATGTCAGAGGAGCATCAAGTTTT 332 | |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 543 AGCTTTTAAGTGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAGTTTT 602 Query 333 CACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAGTATACT-CATCGTCATT 391 ||| |||||| | ||||||||||||||||||||||||||| | ||| || ||||||||| Sbjct 603 CACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTAT-CTACATCGTCATC 661 Query 392 ATCCTAGATCTCAAGGGATATGCT-GGAATGGGGTTG-TGTATTATTTAGCTTCTTTCAA 449 || || |||||||||||||||| | || |||||| || |||||||||||||||||||||| Sbjct 662 ATTCTGGATCTCAAGGGATATG-TAGGGATGGGG-TGTTGTATTATTTAGCTTCTTTCAA 719 Query 450 CGATAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGACTTTAATGTTATTAAGCT 509 |||||| ||||| | |||| ||| |||||||| |||||||||||||||||| |||||| Sbjct 720 GGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGCT 779 Query 510 ACTTAAGAATCATAAACTACAAGAGTATGGTAAATTGGTGGACCACACTGGAAAGATAAC 569 || | || || ||| | ||||| ||| |||| | |||||| || | | |||||||||| | Sbjct 780 ACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAGC 839 Query 570 TATAATGTGTCATGCAAGTA-A-TGGTCTACTTGACCTGTGGGTTCTGGAAGATGCCAAC 627 |||| || ||| || | || | |||| | | |||||||||||||| |||||||||| | Sbjct 840 TATAGTGACTCAGGC-A-TACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGC 897 Query 628 AAAGGAGAATGGTCAACAGCTGCTGCCGTGATTCCTTCTATTGA-AGATTTAGTTGGCAA 686 |||| ||| ||||||| || ||||||||| |||||||||||| | |||| ||||||| || Sbjct 898 AAAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATT-ACAGATATAGTTGGGAA 956 Query 687 TCG-T-GAACA-T-GTGTTCAGTGGTATACTTGGTATTGGTGAGATTATACTTGTACCGC 742 | | | || | | | ||||||||||||||| || ||||||||||||||||| || || Sbjct 957 T-GATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGC 1015 Query 743 T-CCTACCTCCTAA--C-ACGtt-ttttttCCTCTGTTACGATCCTAAGGaaaaaaaTGC 797 | || ||| || || | | || |||||| |||||||||||||| |||||||||||||| Sbjct 1016 TCCCAACC-CCCAAGCCGCCCTTCTTTTTT-CTCTGTTACGATCCCAAGGAAAAAAATGC 1073 Query 798 TAGAAAAGTTGTGATTGAAAGTATTGGAGAAG-CT--GCT-CATGTCAGGGTCTTTTTCG 853 ||||||||||||||||||| | |||||||||| || ||| | |||| |||||||||| Sbjct 1074 TAGAAAAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCG-GTCAATGTCTTTTTCG 1132 Query 854 ATTATGTAGAGAGTCATATGGTTCTGACAAAGG 886 || ||||||||||||||||||||||| | |||| Sbjct 1133 ATCATGTAGAGAGTCATATGGTTCTGTCCAAGG 1165 > Ahg928019 jgi|Araly1|928019|scaffold_300476.1 Length=1221 Score = 195 bits (105), Expect = 7e-49 Identities = 448/605 (74%), Gaps = 58/605 (10%) Strand=Plus/Plus Query 316 GAGGAGCATCAAGTTTTCACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAG 375 ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| Sbjct 628 GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAAAATGGAGAAGGATCGAATGTAAC 687 Query 376 TAT-ACTCATCGTCATTATCCTAGATCTCAAGGGATATGC-TGGAATGGGGTTGTGTATT 433 || | ||||| || | | || | || ||||| ||||| | || || ||||| |||| Sbjct 688 CATGA-TCATCTTCCTCCTTCTTTAACTAAAGGGGTATGCATA-AACGGTGTTGTTTATT 745 Query 434 ATT-TAGCTTCTTTCAAC-GATAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGA 491 ||| | |||| |||| | | || ||||||| || ||||| ||||||| |||||||| Sbjct 746 ATTAT-GCTTGGATCAAAAG-TGAAGGATCTTTGATAAGCTTTGATCTGATATCTGAAGT 803 Query 492 CTTTAATGTTATTAAGCTACTTAAGAATCATAAACTACAA-GAGTATGGTAAATTGGTGG 550 |||||||| |||||| ||| | || || || | ||| | || | | || | Sbjct 804 GTTTAATGTCATTAAGTTACCTGAGGAT-AT---C--CAATGCCTA-G-TGAACT----- 850 Query 551 ACCACACTGGAAAGATAACTATAATGTGTCAT-GCAAGTAATGGT-CTACTTGACCTGTG 608 || | | |||||||||| || || | || | | || | | ||| | |||||||||||| Sbjct 851 AC-A-A-TGGAAAGATAGCTTTAGCGAGTTTTTGTAAATTA-GGTAC-ACTTGACCTGTG 905 Query 609 GGTTCTGGAAGATGCCAACAAAGGAGAATGGTCAACAGCTGCTGC-CGTGATTCCTTCTA 667 ||||||||||||||||| |||| ||||||||||| || | || | | || |||||||| Sbjct 906 GGTTCTGGAAGATGCCAGCAAACAAGAATGGTCAAAAGTTTCT-CTCTTGGTTCCTTCT- 963 Query 668 TTGA-AGATTTAGTTGGCAATCGTGAA-C---ATGT---GTTCAGTGGTATACTTGGTAT 719 | || ||||||||||| || | ||| | || | | |||| |||| |||| ||| Sbjct 964 TGGACAGATTTAGTTGTTGAT-GAGAATCTTTATTTCAAGGTCAGGGGTACACTTAGTAC 1022 Query 720 TGGTGAGATTATACTTGTACCG-CTCCTACCTCCTA-ACACGtttt-ttttCCTCTGTTA 776 || ||| ||||| || |||| ||| | || || || |||| | |||| || ||| Sbjct 1023 CGGGGAGCTTATATTTACACCGACTCGT-CCAGTTAGAC-CGTTCTATTTTA-TCAGTTT 1079 Query 777 CGATC-CTAAGGaaaaaaaTGCTAGAAAAGTTGTGATTGAAAGTA-TTGGAGA-AGCT-- 831 ||||| | |||||||| | ||| | |||||||||| ||||| | | ||||||| | || Sbjct 1080 CGATCTC-AAGGAAAACAGTGCCAAAAAAGTTGTGGTTGAA-GAAATTGGAGATAACTTT 1137 Query 832 GCTCA-TGTC-AGGGTCTTTTTCGATTATGTAGAGAGTCATATGGTTCTGACAAAGGTAA 889 ||| | | || | ||| ||||||| |||| ||||||| |||||||||| |||| |||| Sbjct 1138 GCT-AGTCTCGAAA-TCTATTTCGATCATGTGGAGAGTCCTATGGTTCTGTCAAATGTAA 1195 Query 890 GTTAA 894 ||||| Sbjct 1196 GTTAA 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33128814873 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5