BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13640.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481735 jgi|Araly1|481735|fgenesh2_kg.4__795__AT5G27310.1 767 0.0
Ahg481731 jgi|Araly1|481731|fgenesh2_kg.4__791__AT2G13640.1 767 0.0
Ahg474220 jgi|Araly1|474220|fgenesh2_kg.1__4174__AT2G13640.1 435 5e-121
> Ahg481735 jgi|Araly1|481735|fgenesh2_kg.4__795__AT5G27310.1
Length=975
Score = 767 bits (415), Expect = 0.0
Identities = 529/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 505 TCGGAGTTG-A-AT-AGGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGAAGAAT 561
||||||||| | || | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
Query 562 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAGATCTGAGACTTGT 621
|||||||||||||||||||||| ||||| |||||||||||||||| | || || |||||
Sbjct 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
Query 622 GTCGAGAAATATTTTAAGAAAGAGACAAAGACCAATCTAAAGCAGCTCAACATGAAGACA 681
| |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
Query 682 AGGCGTGTCTCTTTGGAGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 734
|| |||||| |||||||||||||||| || |||||||||| |||||||| ||||
Sbjct 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
Query 735 --AT--TG-ATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGATGAG 789
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
Query 790 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGTGTT 849
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
Query 850 CTCTCAGGTAAACCAGAGGTGTCTCGCTGCATTGACGCTCTCTCGTTATTGAT-GAAGAT 908
|||||||||||| |||||| |||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
Query 909 CAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 968
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
Query 969 AAAACATAAAGATCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1028
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
Query 1029 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1068
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
Score = 520 bits (281), Expect = 1e-146
Identities = 360/396 (91%), Gaps = 14/396 (4%)
Strand=Plus/Plus
Query 1 ATGATCAAGAACGACGGAAAGATGATGAGAGTGAGAATTGCGAAGGAGAGATCTGACTTA 60
|||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||||
Sbjct 4 ATGATCAAGAACGA---AGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTA 60
Query 61 TGCGACTTGACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTC 120
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCGACTGGACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTC 120
Query 121 GAGCGATGCATCGATGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTGAAGGATATA 180
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 121 GAGAGATGCATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA 180
Query 181 CG-ATTGTCTGAATCAATAGTTAAACTGGAGACTTTGAGAAGTCATAGGAACCCTAGAAT 239
| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 181 -GAATTGTCTGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGAT 239
Query 240 CCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAG 299
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 240 CCGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAG 299
Query 300 CGACAACTCTTTCACAGCTGCTCTTACCAAAGATCGTCTGAAGATGAAGAAGCATGTTCT 359
||||||||||||| | || | | ||||| | |||| |||||| |||||||||||||||
Sbjct 300 CGACAACTCTTTCG-A--TG-T-T-ACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCT 353
Query 360 AAAAATGTGTTCGGAGTTGAAGA--A-GAAAGAAGA 392
|| || ||||||||||||||||| | |||||||||
Sbjct 354 AACAAGGTGTTCGGAGTTGAAGATGAAGAAAGAAGA 389
> Ahg481731 jgi|Araly1|481731|fgenesh2_kg.4__791__AT2G13640.1
Length=975
Score = 767 bits (415), Expect = 0.0
Identities = 529/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 505 TCGGAGTTG-A-AT-AGGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGAAGAAT 561
||||||||| | || | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
Query 562 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAGATCTGAGACTTGT 621
|||||||||||||||||||||| ||||| |||||||||||||||| | || || |||||
Sbjct 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
Query 622 GTCGAGAAATATTTTAAGAAAGAGACAAAGACCAATCTAAAGCAGCTCAACATGAAGACA 681
| |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
Query 682 AGGCGTGTCTCTTTGGAGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 734
|| |||||| |||||||||||||||| || |||||||||| |||||||| ||||
Sbjct 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
Query 735 --AT--TG-ATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGATGAG 789
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
Query 790 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGTGTT 849
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
Query 850 CTCTCAGGTAAACCAGAGGTGTCTCGCTGCATTGACGCTCTCTCGTTATTGAT-GAAGAT 908
|||||||||||| |||||| |||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
Query 909 CAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 968
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
Query 969 AAAACATAAAGATCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1028
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
Query 1029 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1068
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
Score = 520 bits (281), Expect = 1e-146
Identities = 360/396 (91%), Gaps = 14/396 (4%)
Strand=Plus/Plus
Query 1 ATGATCAAGAACGACGGAAAGATGATGAGAGTGAGAATTGCGAAGGAGAGATCTGACTTA 60
|||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||||
Sbjct 4 ATGATCAAGAACGA---AGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTA 60
Query 61 TGCGACTTGACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTC 120
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCGACTGGACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTC 120
Query 121 GAGCGATGCATCGATGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTGAAGGATATA 180
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 121 GAGAGATGCATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA 180
Query 181 CG-ATTGTCTGAATCAATAGTTAAACTGGAGACTTTGAGAAGTCATAGGAACCCTAGAAT 239
| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 181 -GAATTGTCTGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGAT 239
Query 240 CCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAG 299
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 240 CCGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAG 299
Query 300 CGACAACTCTTTCACAGCTGCTCTTACCAAAGATCGTCTGAAGATGAAGAAGCATGTTCT 359
||||||||||||| | || | | ||||| | |||| |||||| |||||||||||||||
Sbjct 300 CGACAACTCTTTCG-A--TG-T-T-ACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCT 353
Query 360 AAAAATGTGTTCGGAGTTGAAGA--A-GAAAGAAGA 392
|| || ||||||||||||||||| | |||||||||
Sbjct 354 AACAAGGTGTTCGGAGTTGAAGATGAAGAAAGAAGA 389
> Ahg474220 jgi|Araly1|474220|fgenesh2_kg.1__4174__AT2G13640.1
Length=852
Score = 435 bits (235), Expect = 5e-121
Identities = 307/342 (90%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 730 GGTTCATTGATAAAGAAGAC---TAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGAT 786
||||||||||||| |||||| ||||||||||||||||||| | || |||||||| |||
Sbjct 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492
Query 787 GAGATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGT 846
|||||||| || ||| | ||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552
Query 847 GTTCTCTCAGGTAAACCAGAGGTGTCTCGCTGCATTGACGCTCTCTCGTTATTGATGAAG 906
|||||||| ||||||| |||||||||||| |||||||||||||||| |||| |||||||
Sbjct 553 GTTCTCTCTGGTAAACGAGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAAA 612
Query 907 ATCAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTT 966
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 613 ATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATTT 672
Query 967 ACAAAACATAAAGATCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGA 1026
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 673 ACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAGA 732
Query 1027 CAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1068
||||| ||||||||||||||||||||| | |||| ||||||
Sbjct 733 CAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773
Score = 182 bits (98), Expect = 7e-45
Identities = 159/186 (85%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 226 AGGAACCCTAGAATCCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 285
|||||| || |||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177
Query 286 TACGCACATGGAAGCGACAACTCTTTCACAGCTGCTCTTACCAAAGATCGTCTGAAGATG 345
|||||||| ||||||||||||||||||| ||||| || | || | |||||||
Sbjct 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225
Query 346 AAGAAGCATGTTCTAAAAATGTGTTCGGAGTTGAAGAAGAAAGAAGAACCGGGAACTATG 405
|||||||||||||||| || |||||||||||||||||||||||||| || | || |||||
Sbjct 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285
Query 406 GCTCGT 411
||||||
Sbjct 286 GCTCGT 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5