BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13650.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480315 jgi|Araly1|480315|fgenesh2_kg.3__3016__AT2G13650.1 1834 0.0
> Ahg480315 jgi|Araly1|480315|fgenesh2_kg.3__3016__AT2G13650.1
Length=1315
Score = 1834 bits (993), Expect = 0.0
Identities = 1180/1266 (93%), Gaps = 30/1266 (2%)
Strand=Plus/Plus
Query 201 AAGTTGAATCTTTAGTTCGCGAGCTTTTGGA-CAACTTCGAGGTCTTAGCTTTGCAATGA 259
|||||||||| | ||||||||||||| || || ||||||||||||||| |||||||||
Sbjct 77 AAGTTGAATC--T-CTTCGCGAGCTTTT-GAGCAGCTTCGAGGTCTTAGCCTTGCAATGA 132
Query 260 AATTGTACGAACACGATGGAGTTGATTTAGAAGATGGGAAGACAGTAAAATCCGGAGGAG 319
||| ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 133 AATCGTATGAACACGATGGAGTTGATTTAGAAGATGGGAAGACAGGGAAATCC---GGAG 189
Query 320 ATAAACCAATTCCAAGAAAGATACATAACCGGGCTTTGTTATCCGGTTTAGCTTATTGCA 379
|||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 190 ATAAGCCAATTCAAAGAAAGATACATAATCGGGCTTTGTTATCGGGTTTAGCTTATTGCA 249
Query 380 TTTCATCATGCAGTATGATACTTGTCAACAAGTTTGTTCTCTCCAGCTACAACTTCAATG 439
|||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 250 TTTCATCATGTAGTATGATACTTGTGAACAAGTTTGTCCTTTCCAGCTACAACTTCAATG 309
Query 440 CTGGGATCTTCCTT-ATGTTATACCAGAACTTTGTCTCGGTGATCATTGTGGTTGGTTTG 498
|||| || || || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 310 CTGGAATATT-TTTAATGTTATACCAGAACTTTGTCTCAGTGATTATTGTGGTTGGTTTG 368
Query 499 AGTTTAATGGGTCTAATAACTACTGAACCACTTACTTTGAGGTTGATGAAGGTCTGGTTT 558
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 369 AGCTTAATGGGTCTAATAACAACAGAACCGCTTACTTTGAGGTTGATGAAGGTCTGGTTT 428
Query 559 CCAGTGAATGTCATCTTTGTTGGTATGCTTATCACAAGCATGTTTAGTTTGAAATACATC 618
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CCAGTGAACGTGATATTTGTTGGTATGCTTATCACAAGCATGTTTAGTTTGAAATACATC 488
Query 619 AATGTAGCAATGGTCACTGTCCTGAAGAATGTCACTAATGTGATAACTGCAGTTGGTGAG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AATGTAGCAATGGTCACTGTCCTGAAGAATGTCACTAATGTGATAACTGCAGTTGGTGAG 548
Query 679 ATGTATCTGTTCAACAAGCAACATGACAACAGAGTGTGGGCTGCTCTCTTCTTAATGATA 738
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATGTATCTATTCAACAAGCAACATGACAACAGAGTGTGGGCTGCTCTCTTCTTAATGATA 608
Query 739 ATTTCCGCAGTTTCTGGAGGAATAACAGACCTATCATTCAATGCTGTTGGCTATGCTTGG 798
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 609 ATTTCCGCAGTTTCTGGAGGGATAACAGACCTATCATTCAATGCTGTTGGCTATGCTTGG 668
Query 799 CAGATTGCTAATTGCTTCTTAACTGCATCGTACTCGCTGACTTTGAGAAAGACCATGGAT 858
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 669 CAGATTGCTAATTGCTTCTTAACTGCATCGTACTCTCTGACTTTGAGAAAGACCATGGAT 728
Query 859 ACGGCCAAGCAGGTTACTCAATCTGGAAACTTGAACGAGTTCTCCATGGTCTTGCTTAAT 918
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 729 ACGGCCAAGCAGGTTACTCAATCTGGAAACTTGAACGAGTTCTCTATGGTCTTGCTTAAT 788
Query 919 AACACACTTTCATTACCACTTGGGCTTCTTCTTTCTTATTTC-TTCAACGAGATGGATTA 977
|| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 789 AATACACTTTCATTACCACTTGGGCTTCTTCTTTCTT-TTTCCTTCAACGAGATGGATTA 847
Query 978 TCTCTATCAAACGCCACTTCTACGATTACCAAGTTTCTGGATGGTCATGACACTTAGTGG 1037
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 848 TCTGTATCAAACGCCACTTCTGCGATTGCCAAGTTTCTGGATGGTCATGACACTTAGTGG 907
Query 1038 ACTTCTAGGGCTTGCCATTAGCTTTACTTCAATGTGGTTTCTTCATCAAACTGGAGCAAC 1097
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 908 ACTTTTAGGGCTTGCCATTAGCTTCACTTCAATGTGGTTTCTTCATCAAACTGGAGCAAC 967
Query 1098 AACATACAGCCTGGTGGGATCTCTAAACAAGATACCTCTATCCATCGCGGGGATCGTTCT 1157
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 968 AACATACAGCCTGGTGGGATCACTAAACAAGATACCTCTATCCATCGCGGGGATTGTTCT 1027
Query 1158 TTTCAATGTACCGACCAGTTTGCAGAACTCAGCAAGCATACTCTTTGGTCTTGTCGCTGG 1217
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1028 GTTCAATGTACCGACCAGTTTGCAGAACTCGGCAAGCATACTCTTTGGTCTTGTTGCTGG 1087
Query 1218 AGTTGTATTTGCTAGAGCCAAAATGAGGGAGAAGTCCTAAAATACTAACCATCTACAACA 1277
|||||||||||| ||||||||||||||||||||||||||||| | ||| | | |
Sbjct 1088 AGTTGTATTTGCCAGAGCCAAAATGAGGGAGAAGTCCTAAAA--C-AAC-A-C-A----- 1136
Query 1278 CATTTTACTACATCAATCAGTATAGGACATGGCAAAAGCTGATTAAAGCAGAGCAATGAG 1337
||||||||||||| |||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 1137 --TTTTACTACATCAGTCAGTATAGGACATGGCAAAAGATGATTATAGCAGAACAATGAG 1194
Query 1338 TTTATAACCTCAGAATTCTATGCACGTTATGTGTTTCTTGTAAAAGCTTTCGCCACTCTA 1397
|||||||||||| |||||||| ||| |||||||||||||||||||| ||| ||||
Sbjct 1195 TTTATAACCTCAAAATTCTATTCACAATATGTGTTTCTTGTAAAAGCATTC-----TCTA 1249
Query 1398 CTTGTATAATGTTAGTAAAATATTAATGAATGTATCGATTCTTGAGTGGTAAGAGAAGTG 1457
|||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1250 CTTGTAGAATTTTAGTAAAATATTAATGAATGTATTGATTCTTGAGTGGTAAGAGAAGTG 1309
Query 1458 TTGGTT 1463
|||||
Sbjct 1310 CTGGTT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5