BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13690.1
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906113 jgi|Araly1|906113|Al_scaffold_0003_3241 2383 0.0
> Ahg906113 jgi|Araly1|906113|Al_scaffold_0003_3241
Length=1641
Score = 2383 bits (1290), Expect = 0.0
Identities = 1541/1657 (93%), Gaps = 38/1657 (2%)
Strand=Plus/Plus
Query 63 ATGACAATGGGCGACTCTGACCTCCGTAAACCTACCAATTTCGGCACCGGACATCTATCT 122
|||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACAATGGGCGATTCTAATCTCCGTAAACCTACCAATTTCGGCACCGGACCTCTATCA 60
Query 123 CGCCGACGATCATGGTGTTGCTCTTTCGCCGTACCTCCAGCGAGTCCTGATACTCGT-TC 181
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 61 CGGCGACGATCATGGTGTTGCTCTTTCGCCGTACCTCCGGCGAGTCCTGATACTC-TCTC 119
Query 182 GATTTCATCTCGTAACCACATTCCAGCTAAATCTCAGCAGCAGAGACCTAAACTGGTTCC 241
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 AATTTCATCTCGTAACCACATTCCAGCTAAATCTCAGCAGCAGAGACCTAAACCGGTTCC 179
Query 242 TTGCTCACCGCAAAGCTCTAAATCTGCTTTAAACATCGTAAATCGGATCGACCCGCGTCG 301
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 TTGCTCACCGCAAAGCTCTAAATCTGCTTTAAACATTGTAAATCGAATCGACCCGCGTCG 239
Query 302 GATCTTATCACCGGGTCGGGTTTCACCCATAGATTCGGATCCGACCGTCACTACAATGCA 361
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 GATCTTATCACCGGGTCGGGTTTCACCCATAGATTCGGATCCCACCGTCACTACAATGCA 299
Query 362 AGAGA-C----C-GAGACCACTCAGGAAGAAGAAGATGATGCGGTTGTTGTAGATTCGA- 414
||||| | | ||||||||||| ||||||||||||| | ||||||||||||||| |
Sbjct 300 AGAGACCGAGACTGAGACCACTCACGAAGAAGAAGATG-T--GGTTGTTGTAGATTC-AC 355
Query 415 CACCAAATCTTCGTTCTGAGAGTTTTAGAGCTCCGAAGATTGAGGTTAC-G-----GGTT 468
|||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 356 CACCAAATCTGCGTTCAGAGAGTTTTAGAGCTCCGAAGATTGAGGTTACTGTCTCAGGTT 415
Query 469 CGGG-T----TT-GAGTGAGGGTTACGATGCTAGGTTGAGTTTGAAGGGAAGAAATGGTG 522
|||| | || |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 416 CGGGTTCGGGTTCGAGTGAGGGTTACGATGCTAGGTTGAGTCTGAAGGGAAGAAA---TG 472
Query 523 GTGGGGTTCTGGTGTTGGAGCTTAGCTTGGAGGTTTTGGCTGCGAATTCTGATGTGTTCT 582
|||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 473 GTGGGGTTTTGGTGTTGGAGCTTAGCTCGGAAGTTTTGGCTGCGAATTCGGATGTGTTCG 532
Query 583 CGGGTTTGATTGCGGAGGAGAAGAAGTGTTCTTCTTCTTCATCGTCTTTAGGATTGAAGA 642
||||||||||||||||||| || ||||| ||| |||||| ||||||||||||||||
Sbjct 533 CGGGTTTGATTGCGGAGGACAAAAAGTG---TTCATCTTCA---TCTTTAGGATTGAAGA 586
Query 643 ACACATGCAGGATTGAAGTATGTGATGTGGAGAATCTTGGTGTTTTTAGGGAAACTGTTG 702
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 587 ACACATGCAGGATTGAAGTTTGTGATGTAGAGAATCTTGGTGTTTTTAGAGAAACTGTTG 646
Query 703 AGCTCATGTTTGAGGAAAGTAATGTTATTATCAAGAAGTTTATGACAATGGGAGTCTACA 762
| || ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 647 AACTTATGTTTGAGGAAAGTAATGGGATTATCAAGAAGTTTATGAAAATGGGTGTCTACA 706
Query 763 GAGCCATTGATGTACTTGAGGTAGCGGCTGGAATCAAATTTTCAAGAGCTGTCTTATCGT 822
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 707 GAGCCATTGATGTACTCGAGGTGGCGGCTGGAATCAAATTTTCAAGAGCTGTCTTGTCGT 766
Query 823 GTCTGAAATATCTTGAAGCTGTTCCTTGGACAGAGGATGAAGAGGAAAAACTGAGGAGAC 882
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 767 GTCTGAAATATCTTAAAGTTGTTCCTTGGACAGAGGACGAAGAGGAAAAACTGAGAAGAC 826
Query 883 TTCTTGGAATTTATAGCTTTGATGATGATGCAGTTAGTGAAATTTTGGCAAGATTTAATT 942
||||||||||||||| |||||||| || || | |||| |||||||||||||| ||| |||
Sbjct 827 TTCTTGGAATTTATAACTTTGATGCTGCTGAAATTAGCGAAATTTTGGCAAGGTTTCATT 886
Query 943 CAAACGAGACAGAAAACTTGCAAGACAGTTTATCGAAGAAACTGGTTTGGTCAATTACTT 1002
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || |
Sbjct 887 CAAACGAGACAGAAAACTCACAAGACAGCTTATCAAAGAAACTGGTTTGGTCAATAACCT 946
Query 1003 CCTGCAGTGATGTAAATCCTAGAAACGAGCTCAAATCTCTGGTGAAGGGTCTTCTTTGCA 1062
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 947 CCTGCAGTGATCTAAATCCTAGAAACGAGCTCAAATCTTTAGTGAAGGGTCTTCTTTGCA 1006
Query 1063 AAAGCTCAGTGTACGAGAAAGAACAGCCTGAGATCAACAAGGAAGACATATATAGAGCAG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AAAGCTCAGTGTACGAGAAAGAACAGCCTGAGATCAACAAGGAAGACATATATAGAGCAG 1066
Query 1123 GCAAGTGTTGTGTGGATTCATTAGCTAAGTTGTTTGAAGAGGGCagtagtagtagtagta 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1067 GCAAGTGTTGTGTGGATTCATTAGCTAAGTTGTTTGAAGAGGGCAGTAGTAGTTGTAGTA 1126
Query 1183 gCAAGAAAGAAAAGCCATTGATTGAAAGTATTTCGAGGGAGGTTGAGAACATAAACTGGC 1242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1127 GCAAGAAAGAAAAGCCATTGATTGAAAGTATTTCAAGGGAGGTTGAGAACATAAACTGGC 1186
Query 1243 TGCTGGAGATCATGATAGATCGGGAAATAGCAGAAGAATTTGTGGAAATATGGGGGAAGC 1302
|| |||| |||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1187 TGTTGGAAATCATGATAGATTGGGAAATAGCAGAGGAATTTGTGGAGATATGGGGAAAGC 1246
Query 1303 AAAGAAGGCTAGTGGAGATGCATGAGAGAGTGTCACCAATGGTGAGGTATGAAGTAAGCA 1362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1247 AAAGAAGGCTAGTGGAGATGCATGAGAGGGTGTCACCAATGGTGAGGTATGAAGTAAGCA 1306
Query 1363 GAGTAACAGGAGCGATATTT-ATTGCAATGGGGAAAAGGAGAGTGCAATGCGGAGGAGAA 1421
|||||||||| || || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1307 GAGTAACAGGGGCAAT-TTTCATAGCAATGGGGAAAAGGAGAGTGCAATGCGGAGGAGAA 1365
Query 1422 GCAAGGGCGGGGCTAGTAGAAGCGTGGTTCAAGCCAATGTTAGTAGATTTTGGGTGGCTA 1481
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GCAAGGGCGGGTTTAGTAGAAGCGTGGTTCAAGCCAATGTTAGTAGATTTTGGGTGGCTA 1425
Query 1482 CAGAGATGCAAGAAAGGACTAGACATGAGGGAAGTAGAAGAAGGGATGGGGCAAACGCTT 1541
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1426 CAAAGATGCAAGAAGGGACTAGACATGAGGGAAGTAGAGGAAGGGATGGGGCAAACGCTG 1485
Query 1542 TTAACGCTACCAGTAAAAG-AGCAGTATCAAGTGTTCATGGAATGGTTCAGGTGGTTCTC 1600
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1486 TTAACGCTACCAGTAAA-GCAGCAGTATCAAGTGTTCATGGAATGGTTCAGGTGGTTTTC 1544
Query 1601 AAAGCATGGGACTGAGTGCCCTAATCTCAGCAAGGCGTTTCAGATATGGTGGCGTAGGTC 1660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1545 AAAGCATGGGACTGAGTGCCCTAATCTCAGCAAGGCGTTTCAGATTTGGTGGCGTAGGTC 1604
Query 1661 ATTCCTTAGAGGTGTAGAATCATCTACTTGTAGGTAA 1697
|||||||||||||||||| ||||||||||||||||||
Sbjct 1605 ATTCCTTAGAGGTGTAGAGTCATCTACTTGTAGGTAA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5