BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13790.1
Length=2234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931117 jgi|Araly1|931117|scaffold_303574.1 3038 0.0
Ahg319434 jgi|Araly1|319434|fgenesh1_pm.C_scaffold_3002450 2189 0.0
Ahg491347 jgi|Araly1|491347|fgenesh2_kg.7__780__AT4G33430.1 1594 0.0
> Ahg931117 jgi|Araly1|931117|scaffold_303574.1
Length=1903
Score = 3038 bits (1645), Expect = 0.0
Identities = 1821/1907 (95%), Gaps = 8/1907 (0%)
Strand=Plus/Plus
Query 140 ATGGCTTTGCTTTTACTCTGATGACAAGTTCAAAAATGGAACAAAGATCACTCCTTTGCT 199
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTGCTTTTACTCTGATGACTTGTTCAAAAATGGAACAAAGATCACTCCTTTGCT 60
Query 200 TCCTTTATCTGCTCCTACTATTCAATTTCACTCTCAGAGTCGCTGGAAACGCT-GAAGGT 258
||||| | || |||||||| |||||||| |||||||||||||| | ||||| | ||||||
Sbjct 61 TCCTTCAGCTTCTCCTACTCTTCAATTTTACTCTCAGAGTCGCCGCAAACG-TCGAAGGT 119
Query 259 GATGCTTTGACTCAGCTGAAAAACAGTTTGTCATCAGGTGACCCTGCAAACAATGTACTC 318
|||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 120 GATGCTTTAACTCAGCTGAGAAACAGTTTATCATCAGGTGACCCAGCAAACAATGTACTC 179
Query 319 CAAAGCTGGGATGCTACTCTTGTTACTCCATGTACTTGGTTTCATGTTACTTGCAATCCT 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 CAAAGCTGGGATGCTACTCTTGTTACTCCATGTACATGGTTTCATGTTACTTGCAATCCT 239
Query 379 GAGAATAAAGTTACTCGTGTTGACCTTGGGAATGCAAAACTATCTGGAAAGTTGGTTCCA 438
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GAGAATAAAGTTACTCGTGTTGACCTTGGGAATGCAAAACTATCTGGAAAACTGGTTCCA 299
Query 439 GAACTTGGTCAGCTTT-TAAACTTGCAGTACTTGGAGCTTTATAGCAATAACATTACAGG 497
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GAACTTGGTCAGCTTTCT-AACTTGCAGTACTTGGAGCTTTATAGCAATAACATTACTGG 358
Query 498 GGAGATACCTGAGGAGCTTGGCGACTTGGTGGAACTAGTAAGCTTGGATCTTTACGCAAA 557
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 359 GGAGATACCTGAGGAGCTTGGCAACTTGATGGAACTAGTAAGCTTGGATCTTTACGCGAA 418
Query 558 CAGCATAAGCGGTCCCATCCCTTCGTCTCTTGGCAAACTAGGAAAACTCCGGTTCTTGCG 617
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAGCATAAGTGGTCCCATCCCTTCGTCTCTTGGCAAACTAGGAAAACTCCGGTTCTTGCG 478
Query 618 TCTTAACAACAATAGCTTATCAGGGGAAATTCCAATGACTTTGACTTCTGTGCAGCTGCA 677
|||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 479 TCTTAATAACAATAGCTTATCAGGAGAAATTCCAATGACTTTGACTGCTGTGAAGCTGCA 538
Query 678 AGTTCTGGATATCTCAAACAATCGGCTCAGTGGAGATATTCCTGTTAATGGTTCTTTTTC 737
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 539 AGTTCTGGATATCTCAAACAATCGGCTTAGTGGAGATATTCCTGTTAATGGTTCCTTTTC 598
Query 738 GCTCTTCACTCCTATCAGTTTTGCGAATAATAGCTTAACGGATCTTCCCGAACCTCCGCC 797
||||||||||||||| |||||| |||||||| |||||||| | | | |||||||||||
Sbjct 599 GCTCTTCACTCCTATTAGTTTTAAGAATAATAACTTAACGGCGCCTGCTGAACCTCCGCC 658
Query 798 TACTTCTACCTCTCCTACGCCACCACCACCTTCAGGGGGGCAAATGACTGCAGCAATAGC 857
|||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 659 TACTTCCACTTCTCCTACGCCACCACCACCTTCAGGGAGTCAAATGACTGCAGCAATAGC 718
Query 858 AGGGGGAGTTGCTGCAGGTGCAGCACTTCTATTTGCTGTTCCAGCCATTGCGTTTGCTTG 917
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 719 AGGGGGAGTTGCTGCAGGTGCAGCACTTCTATTTGCTGTCCCAGCCATTGCGTTTGCTTG 778
Query 918 GTGGCTCAGAAGAAAACCACAGGACCACTTTTTTGATGTACCTGCTGAAGAAGACCCAGA 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGGCTCAGAAGAAAACCACAGGACCACTTTTTTGATGTACCTGCTGAAGAAGACCCAGA 838
Query 978 GGTTCATTTAGGACAACTCAAAAGGTTTACCTTGCGTGAACTGTTAGTTGCTACTGATAA 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 GGTTCATTTAGGACAACTCAAAAGGTTTACCTTGCGTGAACTGTTAGTTGCTACAGATAA 898
Query 1038 CTTTAGCAATAAAAATGTATTGGGTAGAGGTGGTTTTGGTAAAGTGTATAAAGGACGTTT 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTTTAGCAATAAAAATGTATTGGGTAGAGGTGGTTTTGGTAAAGTGTATAAAGGACGTTT 958
Query 1098 AGCCGATGGCAATCTAGTGGCTGTCAAAAGGCTAAAAGAAGAACGTACCAAGGGTGGGGA 1157
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 AGCCGATGGCAATCTAGTGGCTGTGAAAAGGCTAAAAGAAGAACGTACCAAGGGTGGGGA 1018
Query 1158 ACTGCAGTTTCAAACCGAAGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCG 1217
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACTGCAGTTTCAAACCGAGGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCG 1078
Query 1218 GCTTCGTGGCTTTTGCATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCTAA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 GCTTCGTGGCTTTTGCATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCCAA 1138
Query 1278 TGGAAGTGTTGCTTCTTGTTTAAGAGAGCGTCCTGAAGGCAATCCAGCACTTGATTGGCC 1337
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 TGGAAGTGTTGCTTCATGTTTAAGAGAGCGTCCTGAAGGCAATCCACCACTTGATTGGCC 1198
Query 1338 AAAAAGAAAGCATATTGCTCTGGGATCAGCAAGGGGGCTTGCGTATTTACATGATCATTG 1397
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1199 AAAAAGAAAGCATATTGCTCTGGGATCAGCAAGAGGGCTCGCGTATTTACATGATCACTG 1258
Query 1398 CGACCAAAAAATCATTCACCGGGATGTTAAAGCTGCTAATATATTGTTAGATGAAGAGTT 1457
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1259 TGACCAGAAAATCATTCACCGGGATGTGAAAGCTGCAAATATATTGTTAGATGAAGAGTT 1318
Query 1458 TGAAGCTGTTGTTGGAGATTTTGGGCTCGCAAAATTAATGAATTATAATGACTCCCATGT 1517
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1319 TGAAGCTGTTGTTGGAGATTTTGGGCTCGCAAAATTAATGAATTACAACGAATCCCATGT 1378
Query 1518 GACAACTGCTGTACGCGGTACAATTGGCCATATAGCGCCC-GAGTACCTCTCGACAGGAA 1576
||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 1379 GACAACTGCTGTACGTGGTACAATTGGCCATATAGC-CCCTGAGTACCTTTCGACAGGAA 1437
Query 1577 AATCTTCTGAGAAGACTGATGTTTTTGGGTACGGGGTCATGCTTCTCGAGCTCATCACTG 1636
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CATCTTCTGAGAAAACTGATGTTTTTGGGTACGGGGTCATGCTTCTCGAGCTCATCACTG 1497
Query 1637 GACA-AAAGGCTTTCGATCTTGCTCGGCTTGCAAATGATGATGATATCATGTTACTCGAC 1695
|||| |||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1498 GACAGAAAG-CTTTTGATCTTGCTCGGCTTGCTAATGATGATGATATCATGTTACTCGAC 1556
Query 1696 TGGGTGAAAGAGGTTTTGAAAGAGAAGAAGTTGGAAAGCCTTGTGGATGCAGAACTCGAA 1755
||||||||||| || ||||||||||||||||||||||||||||| || ||||| || |||
Sbjct 1557 TGGGTGAAAGAAGTGTTGAAAGAGAAGAAGTTGGAAAGCCTTGTTGACGCAGAGCTTGAA 1616
Query 1756 GGAAAGTACGTGGAAACAGAAGTGGAGCAGCTGATACAAATGGCTCTGCTCTGCACTCAA 1815
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1617 GGAAAGTACGTGGAAGCAGAAGTGGAGCAGCTGATTCAAATGGCTCTGCTCTGCACTCAA 1676
Query 1816 AGTTCTGCAATGGAACGTCCAAAGATGTCAGAAGTAGTGAGAATGCTGGAAGGAGATGGT 1875
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1677 AGTTCTGCAATGGAACGTCCAAAGATGTCAGAAGTGGTGAGAATGCTGGAAGGAGATGGT 1736
Query 1876 TTAGCTGAGAGATGGGAAGAATGGCAAAAGGAGGAGATGCCAATACATGATTTTAACTAT 1935
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1737 TTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAGATGCCAATACATGATTTTAATTAT 1796
Query 1936 CAAGCCTATCCTCATGCTGGCACTGACTGGCTCATCCCCTATTCCAATTCCCTTATCGAA 1995
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1797 CAAGCCTATCCTCATGCTGGCACTGAATGGCTCATCCCCTATTCCAATTCCCTTATCGAA 1856
Query 1996 AACGATTACCCCTCGGGTCCAAGATAACCTTTTAGAAAGGGTCTTTT 2042
|||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 1857 AACGATTACCCCTCAGGTCCAAGATAACCTTTAAGAAAGGGTCATTT 1903
> Ahg319434 jgi|Araly1|319434|fgenesh1_pm.C_scaffold_3002450
Length=1797
Score = 2189 bits (1185), Expect = 0.0
Identities = 1554/1724 (90%), Gaps = 58/1724 (3%)
Strand=Plus/Plus
Query 307 AACAATGTACTCCAAAGCTGGGATGCT-ACTCTTGTTACTCCATGTAC-TTGGTTTCATG 364
||||||||||| ||||||||| ||| | |||| ||||||||||||| | | ||||| ||
Sbjct 124 AACAATGTACTTCAAAGCTGGAATG-TCACTCATGTTACTCCATGTTCATGGGTTT-ATA 181
Query 365 TTACTTGCAATCCTGAGAATAAAGTTACTCGTGTTGACCTTGGG-AATGCAAAACTATCT 423
| ||||||||| ||| || | |||||||||||||||| |||| |||| || ||||||
Sbjct 182 TAACTTGCAATAGTGAAAACAGTGTTACTCGTGTTGACC-TGGGAAATGTTAATCTATCT 240
Query 424 GGA-AAGTTGGTTCCAGAACTTGGTCAGCTTTTAAACTTGCAGTACTTGGAGCTTTATAG 482
||| || |||| ||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GGAGAA-CTGGTGCCACAGCTTGGTCAGCTTCCAAACTTGCAGTACTTGGAGCTTTATAG 299
Query 483 CAATAACATTACAGGGGAGATACCTGAGGAGCTTGGCGACTTGGTGGAACTAGTAAGCTT 542
|||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 300 CAATAACATTACTGGGGAGATACCTGAGGAGCTTGGCAACTTGATGGAACTAGTAAGCTT 359
Query 543 GGATCTTTACGCAAACAGCATAAGCGGTCCCATCCCTTCGTCTCTTGGCAAACTAGGAAA 602
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GGATCTTTACGCGAACAGCATAAGTGGTCCCATCCCTTCGTCTCTTGGCAAACTAGGAAA 419
Query 603 ACTCCGGTTCTTGCGTCTTAACAACAATAGCTTATCAGGGGAAATTCCAATGACTTTGAC 662
||||||||||||||||||||| ||||| |||||||| || |||||||||| | |||||||
Sbjct 420 ACTCCGGTTCTTGCGTCTTAATAACAACAGCTTATCTGGAGAAATTCCAAGGTCTTTGAC 479
Query 663 TTCTGTG-CAGCTGCAAGTTCTGGATATCTCAAACAATCGGCTCAGTGGAGATATTCCTG 721
| ||||| || ||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 TGCTGTGCCA-CTGCAGGATCTGGATGTCTCAAACAATCGGCTCAGTGGAGATATTCCTG 538
Query 722 TTAATGGTTCTTTTTCGCTCTTCACTCCTATCAGTTTTGCGAATAATAGCTTAACGGATC 781
| |||||||||||||||| |||||| |||| |||||||| ||||||| |||| || |
Sbjct 539 TAAATGGTTCTTTTTCGCAGTTCACTTCTATTAGTTTTGCCAATAATAATTTAA-GG--C 595
Query 782 TTCCCGAACCTCCGCCTACTTCTACCTCTCCTACGCCACCACCACCTTCAGGGGGGCAAA 841
| || |||| | | | | || | | | |||||| |||||||| || ||
Sbjct 596 --CGCG-ACCT--G-C-A----T--CT-T-C-A--CCACCATCACCTTCA----GG--AA 631
Query 842 TGACTGCAGCAATAGCAGGGGGAGTTGCTGCAGGTGCAGCACTTCTATTTGCTGTTCCAG 901
||||||||||||||||||||||||||| ||||||||| ||||||||| | || |
Sbjct 632 TGACTGCAGCAATAGCAGGGGGAGTTGTTGCAGGTGCGGCACTTCTA-----T-TT---G 682
Query 902 CCATTGCGTTTGCTTGGTGGCTCAGAAGAAAACCACAGGACCACTTTTTTGATGTACCTG 961
| || ||||||||||| | | |||||||| ||||| |||||||||||||||||||
Sbjct 683 -C---GC--TTGCTTGGTGGATGAAAAGAAAACTGCAGGATCACTTTTTTGATGTACCTG 736
Query 962 CTGAAGAAGACCCAGAGGTTCATTTAGGACAACTCAAAAGGTTTACCTTGCGTGAACTGT 1021
||| ||||| ||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 737 TTGAGGAAGATCCAGAGGTTCATTTAGGACAATTTAAAAGGTTTTCCTTGCGTGAACTGC 796
Query 1022 TAGTTGCTACTGATAACTTTAGCAATAA-AAATGTATTGGGTAG-AGGTGGTTTTGGTAA 1079
|||||||||| || || |||||||| || ||||||||||||| | ||| ||||||||||
Sbjct 797 TAGTTGCTACAGAGAAATTTAGCAA-AAGAAATGTATTGGGT-GAAGGACGTTTTGGTAA 854
Query 1080 AGTGTATAAAGGACGTTTAGCCGATGGCAATCTAGTGGCTGTCAAAAGGCTAAAAGAAGA 1139
|||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 855 AGTGTATAAAGGACGTTTAGCCGATGGCTCTCTAGTGGCTGTGAAAAGGCTAAGAGAAGA 914
Query 1140 ACGTACCAAGGGTGGGGAACTGCAGTTTCAAACCGAAGTTGAGATGATCAGTATGGCCGT 1199
| ||||||||||| || |||||||||| ||||| || |||||||||||||||||||||||
Sbjct 915 ATGTACCAAGGGTAGGAAACTGCAGTTCCAAACTGAGGTTGAGATGATCAGTATGGCCGT 974
Query 1200 TCATAGGAACTTGCTTCGGCTTCGTGGCTTTTGCATGACTCCAACTGAAAGATTACTTGT 1259
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 975 TCATAGGAACTTGCTTCGGCTTCATGGTTTTTGCATGACTCCAACTGAAAGATTACTTGT 1034
Query 1260 TTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGTTTAAGAGAGCGTCCTGAAGGCAA 1319
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1035 TTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGTTTAAAAGAACGTCCTGAAGGCAA 1094
Query 1320 TCCAGCACTTGATTGGCCAAAAAGAAAGCATATTGCTCTGGGATCAGCAAGGGGGCTTGC 1379
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 1095 TCCACCACTTGATTGGGCAAAAAGAAAGAATATTGCTTTGGGATCAGCAAGGGGGCTCGC 1154
Query 1380 GTATTTACATGATCATTGCGACCAAAAAATCATTCACCGGGATGTTAAAGCTGCTAATAT 1439
|||| ||||||||||| || ||||||||||||||||||||||||| |||||||| |||||
Sbjct 1155 GTATCTACATGATCATGGCAACCAAAAAATCATTCACCGGGATGTGAAAGCTGCGAATAT 1214
Query 1440 ATTGTTAGATGAAGAGTTTGAAGCTGTTGTTGGAGATTTTGGGCTCGCAAAATTAATGAA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 ATTGTTAGATGAAGAGTTTGAAGCTGTTGTTGGAGATTTTGGGCTCGCAAAATTAATGAA 1274
Query 1500 TTATAATGACTCCCATGTGACAACTGCTGTACGCGGTACAATTGGCCATATAGCGCCCGA 1559
|||||| |||||||||||||||||||| |||||||||||| ||||||||||||| || ||
Sbjct 1275 TTATAACGACTCCCATGTGACAACTGCGGTACGCGGTACATTTGGCCATATAGCTCCTGA 1334
Query 1560 GTACCTCTCGACAGGAAAATCTTCTGAGAAGACTGATGTTTTTGGGTACGGGGTCATGCT 1619
|||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1335 GTACTTTTCGACAGGAAAATCTTCTGAGAAAACTGATGTTTTTGGATACGGGGTCATGCT 1394
Query 1620 TCTCGAGCTCATCACTGGACA-AAAGGCTTTCGATCTTGCTCGGCTTGCAAATGATGATG 1678
||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 1395 TCTCGAGCTCATCACTGGACAGAAA-GCTTTCGATCTTGCTCGGCTTGCTAATGATGATG 1453
Query 1679 ATATCATGTTACTCGACTGGGTGAAAGAGGTTTTGAAAGAGAAGAAGTTGGAAAGCCTTG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 ATATCATGTTACTCGACTGGGTGAAAGAGGTTTTGAAAGAGAAGAAGTTGGAAAGCCTTG 1513
Query 1739 TGGATGCAGAACTCGAAGGAAAGTACGTGGAAACAGAAGTGGAGCAGCTGATACAAATGG 1798
| || ||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1514 TTGACGCAGAGCTTGAAGGAAAGTACGTGGAAACAGAAGTGGAGCAGCTGATTCAAATGG 1573
Query 1799 CTCTGCTCTGCACTCAAAGTTCTGCAATGGAACGTCCAAAGATGTCAGAAGTAGTGAGAA 1858
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1574 CTCTGCTCTGCACTCAAAGTTCTGCGATGGAACGTCCCAAGATGTCAGAAGTAGTGAGAA 1633
Query 1859 TGCTGGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAATGGCAAAAGGAGGAGATGCCAA 1918
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1634 TGCTGGAAGGAGATGGTTTAGCTGAGCGATGGGAAGACTGGCAAAAGGAGGAGATGCCAA 1693
Query 1919 TACATGATTTTAACTATCAAGCCTATCCTCATGCTGGCACTGACTGGCTCATCCCCTATT 1978
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 TACATGATTTTAATTATCAAGCCTATCCTCATGCTGGCACTGACTGGCTCATCCCCTATT 1753
Query 1979 CCAATTCCCTTATCGAAAACGATTACCCCTCGGGTCCAAGATAA 2022
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1754 CCAATTCCCTTATCGAAAACGATTACCCCTCAGGTCCAAGATAA 1797
> Ahg491347 jgi|Araly1|491347|fgenesh2_kg.7__780__AT4G33430.1
Length=2444
Score = 1594 bits (863), Expect = 0.0
Identities = 1519/1829 (83%), Gaps = 71/1829 (4%)
Strand=Plus/Plus
Query 231 TCTCAGAGTCGCTGGAAACGCTGAAGGTGATGCTTTGACT-CAGCTGAAAAACAGTTTGT 289
|||||||||| | || ||||| |||||||||||| ||| | || ||||||||||| | |
Sbjct 442 TCTCAGAGTCTCGGGCAACGCCGAAGGTGATGCTCTGAGTGCA-CTGAAAAACAG--T-T 497
Query 290 CATCAGGTGACCCTGCAAACAATGTACTCCAAAGCTGGGATGCTACTCTTGTTACTCCAT 349
| || |||||| | ||||| || || |||||||||||||| |||||||| |||||||
Sbjct 498 --T-AGCTGACCC--C-AACAAGGTGCTTCAAAGCTGGGATGCGACTCTTGTCACTCCAT 551
Query 350 GTACTTGGTTTCATGTTACTTGCAAT-CCTGAGAATAAAGTTACTCGTGTTGACCTTGGG 408
|||| ||||||||||||||||||||| | || |||| ||||| ||||||||||||||
Sbjct 552 GTACATGGTTTCATGTTACTTGCAATAGC-GATAATAGCGTTACACGTGTTGACCTTGGC 610
Query 409 AATGCAAAACTATCTGGAAAGTTGGTTCCA-G-AACTTGGTCAGCTTTTAAACTTGCAGT 466
|||||||| ||||||||| || | | | | | |||||||||||||| |||||||||||
Sbjct 611 AATGCAAATCTATCTGGACAGCTCG-T-AATGCAACTTGGTCAGCTTCCAAACTTGCAGT 668
Query 467 ACTTGGAGCTTTATAGCAATAACATTACAGGGGA-GATACCTGAGGAGCTTGGCGACTTG 525
|||||||||||||||||||||||||||| |||| || || ||| ||||||| | |||
Sbjct 669 ACTTGGAGCTTTATAGCAATAACATTAC-TGGGACAATCCCAGAGCAGCTTGGAAATTTG 727
Query 526 GTGGAACTAGTAAGCTTGGATCTTTACGCAAACAGCATAAGCGGTCCCATCCCTTCGTCT 585
|||| | || ||||||||||||||| |||| |||||||||| ||||| || ||
Sbjct 728 ACGGAATTGGTGAGCTTGGATCTTTACTTGAACAATTTAAGCGGTCCTATCCCATCAACT 787
Query 586 CTTGGCAAAC-TAGGAAAACTCCGGTTCTTGCGTCTTAACAACAATAGCTTATCAGGGGA 644
|| ||| || || | |||||||| |||||||||||||| |||||||||||||| || ||
Sbjct 788 CTCGGCCGACTTAAG-AAACTCCGTTTCTTGCGTCTTAATAACAATAGCTTATCTGGAGA 846
Query 645 AATTCCAATGACTTTGACTTCTGTGC--A-GCTGCAAGTTCTGGATATCTCAAACAATCG 701
|||||||| | || ||||| |||| | | |||||||||||||||| ||||||| ||| |
Sbjct 847 AATTCCAAGGTCTCTGACTGCTGTCCTGACGCTGCAAGTTCTGGATCTCTCAAATAAT-G 905
Query 702 G-CTCAGTGGAGATATTCCTGTTAATGGTTCTTTTTCGCTCTTCACT-C----CT-ATCA 754
| |||| |||||||||||||||||||||||| ||||| || |||||| | || ||||
Sbjct 906 GTCTCACTGGAGATATTCCTGTTAATGGTTCCTTTTCACTTTTCACTCCTGGTCTCATCA 965
Query 755 GTTTTGCGAATA--ATAGCTTAACGGATCTTCCCGAACCTCCGCCTACTTCTACCTCTCC 812
||||||| || | | || || || ||||| | | ||||||| || ||| ||||||
Sbjct 966 GTTTTGCCAACACCA-AG-TTGACTCCCCTTCCTGCATCTCCGCCGCCTCCTATCTCTCC 1023
Query 813 TACGCCACCACCACCTTCAGGG-G-GGCA-AATGACTGCAGCAATAGCAGGG-GGAGTTG 868
||| || ||| ||||| ||||| | | ||| |||| ||| || || ||| |||||||
Sbjct 1024 TACACCGCCATCACCTGCAGGGAGTAATAGAATTACTGGAGCGATTGC-GGGAGGAGTTG 1082
Query 869 CTGCAGGTGCAGCACTTCTATTTGCTGTTCCAGCCATTGCGTTTGCTTGGTGGCTCA-GA 927
|||||||||| |||||||||||||||||||| |||||||| |||||||||||| | ||
Sbjct 1083 CTGCAGGTGCTGCACTTCTATTTGCTGTTCCGGCCATTGCACTTGCTTGGTGGCGAAGGA 1142
Query 928 AGAAAACCACAGGACCACTTTTTTGATGTACCTGCTGAAGAAGACCCAGAGGTTCATTTA 987
| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1143 A-AAAACCACAGGACCACTTCTTTGATGTACCAGCTGAAGAGGACCCAGAGGTTCATTTA 1201
Query 988 GGACAACTCAAAAGGTTTACCTTGCGTGAACTGTTAGTTGCTACTGATAACTTTAGCAAT 1047
||||||||||| |||||| | ||||||||||| ||||||| | ||||| ||||||||
Sbjct 1202 GGACAACTCAAGAGGTTTTCATTGCGTGAACTACAAGTTGCTTCGGATAATTTTAGCAAC 1261
Query 1048 AAAAATGTATTGGGTAGAGGTGGTTTTGGTAAAGTGTATAAAGGACGTTTAGCCGATGGC 1107
| ||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1262 AGAAACATATTGGGTAGAGGTGGTTTTGGTAAAGTTTATAAAGGACGGTTAGCTGATGGT 1321
Query 1108 AATCTAGTGGCTGTCAAAAGGCTAAAAGAAGAACGTA-CCAAGGGTGGGGAACTGCAGTT 1166
| | ||||||| || |||||||||||||| || || | |||| ||||| |||||||||||
Sbjct 1322 ACTTTAGTGGCGGTTAAAAGGCTAAAAGAGGAGCGCACCCAA-GGTGGTGAACTGCAGTT 1380
Query 1167 TCAAACCGAAGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCGGCTTCGTGG 1226
|| ||||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct 1381 CCAGACCGAGGTTGAGATGATTAGTATGGCGGTTCACAGAAACTTGCTTCGGCTTCGTGG 1440
Query 1227 CTTTTGCATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCTAATGGAAGTGT 1286
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 ATTTTGCATGACTCCAACCGAAAGATTGCTTGTTTATCCCTACATGGCTAATGGAAGTGT 1500
Query 1287 TGCTTCTTGTTTAAGAGAGCGTCCTGAAGGCA-ATCCAGCACTTGATTGGCCAAAAAGAA 1345
||| || ||||||||||| |||||||| | | | ||| |||||||||||||||| |||
Sbjct 1501 TGCCTCCTGTTTAAGAGAACGTCCTGA-GTCCCAGCCACCACTTGATTGGCCAAAGAGAC 1559
Query 1346 AGCATATTGC-TCTGGGATCAGCAAGGGGGCTTGCGTATTTACATGATCATTGCGACCAA 1404
||| |||||| | ||||||| ||||| |||||||| ||||||||||||||||| |||| |
Sbjct 1560 AGCGTATTGCGT-TGGGATCTGCAAGAGGGCTTGCATATTTACATGATCATTGTGACCCA 1618
Query 1405 AAAATCATTCACCGGGATGTTAAAGCTGCTAATATATTGTTAGATGAAGAGTTTGAAGCT 1464
|| || ||||| || ||||| |||||||| ||||| || || |||||||||||||||||
Sbjct 1619 AAGATTATTCATCGAGATGTGAAAGCTGCAAATATTTTATTGGATGAAGAGTTTGAAGCC 1678
Query 1465 GTTGTTGGAGATTTTGGGCTCGCAAAATTAATGAATTATAATGACTCCCATGTGACAACT 1524
|| ||||| |||||||| || |||||| | ||| | || || ||| | || ||||||||
Sbjct 1679 GTGGTTGGGGATTTTGGACTTGCAAAACTCATGGACTACAAAGACACACACGTGACAACC 1738
Query 1525 GCTGTACGCGGTACAATTGGCCATATAGCGCCC-GAGTACCTCTCGACAGGAAAATCTTC 1583
|| || || ||||||||||| |||||||| ||| |||||||| || ||||||||||| ||
Sbjct 1739 GCAGTGCGTGGTACAATTGGTCATATAGC-CCCTGAGTACCTTTCTACAGGAAAATCATC 1797
Query 1584 TGAGAAGACTGATGTTTTTGGGTACGGGGTCATGCTTCTCGAGCTCATCACTGGACAAAA 1643
||||| || ||||| |||||||| || ||||||||||| ||||| |||||||||||||
Sbjct 1798 AGAGAAAACCGATGTCTTTGGGTATGGAGTCATGCTTCTTGAGCTTATCACTGGACAAAG 1857
Query 1644 GGCTTTCGATCTTGCTCGGCTTGCAAATGATGATGATATCATGTTACTCGACTGGGTGAA 1703
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 1858 GGCTTTCGATCTTGCTCGCCTTGCAAATGATGATGATGTCATGTTACTAGACTGGGTGAA 1917
Query 1704 AGAGGTT-TTGAAAGAGAAGAAGTTGGAAAGC-CTTGTGGATGCAGAACT-CGAAGGAAA 1760
|| |||| || ||||||||||| |||||| || || || |||| || || | | || ||
Sbjct 1918 AG-GGTTGTTAAAAGAGAAGAAATTGGAA-GCACTAGTAGATGTTGATCTTC-AGGGGAA 1974
Query 1761 GTACGTGGAA-ACAGAAGTGGAGCAGCTGATACAAATGGCTCTGCTCTGCACTCAAAGTT 1819
||| | || | |||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 1975 TTACATAGACGA-AGAAGTGGAGCAGCTGATTCAAGTGGCTCTGCTCTGCACTCAGAGTT 2033
Query 1820 CTGCAATGGAACGTCC-AAAGATGTCAGAAGTAGTGAGAATGCTGGAAGGAGATGGTTTA 1878
| |||||||| | || ||| ||||| ||||| || |||||||| |||||||||||||||
Sbjct 2034 CACCAATGGAAAGACCCAAA-ATGTCTGAAGTTGTAAGAATGCTTGAAGGAGATGGTTTA 2092
Query 1879 GCTGAGAGATGGGAAGAATGGCAAAAGGAGGAGATGC-CAATACATGATTTTAACTATC- 1936
||||||||||||||||| |||||||||||||| ||| || ||| ||||| ||||| |
Sbjct 2093 GCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAAATGTTCAG-ACAAGATTTCAACTACCC 2151
Query 1937 AAGCCTATCCTC-ATGCTGGCA-CTGACTGGCTCATCCCCT-ATTCCAATTCCCTTATCG 1993
|| || ||| || | || | | ||| |||| |||| | |||||| ||||| ||||
Sbjct 2152 AACCC-ATCATCCA-GCCGT-ATCTGGCTGGATCATTGG-TGATTCCACTTCCCAGATCG 2207
Query 1994 AAAACGATTACCCCTCGGGTCCAAGATAA 2022
||||||| |||||||||||||||||||||
Sbjct 2208 AAAACGAGTACCCCTCGGGTCCAAGATAA 2236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84103260960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5