BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13800.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319434 jgi|Araly1|319434|fgenesh1_pm.C_scaffold_3002450 2551 0.0
Ahg931117 jgi|Araly1|931117|scaffold_303574.1 2220 0.0
Ahg491347 jgi|Araly1|491347|fgenesh2_kg.7__780__AT4G33430.1 1007 0.0
> Ahg319434 jgi|Araly1|319434|fgenesh1_pm.C_scaffold_3002450
Length=1797
Score = 2551 bits (1381), Expect = 0.0
Identities = 1674/1814 (92%), Gaps = 25/1814 (1%)
Strand=Plus/Plus
Query 6 ATGGAACATGGATCATCCCGTGGCTTTATTTGGCTGATTCTATTTCTCGATTTTGTTTC- 64
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGAACAAGGATCGTCCCGTGGCTTTATTTGGCTGATTCTATTTCTCGA-TTTGGTTCT 59
Query 65 CAGAGTCACCGGAAAAACACAAGTTGATGCTCTCAT-TGCTCTAAGAAG-CAGTTTATCA 122
||||||||||||||| ||||||||||||||||| || ||||||||| || ||| || | |
Sbjct 60 CAGAGTCACCGGAAACACACAAGTTGATGCTCT-ATCTGCTCTAAG-AGTCAG-TT-T-A 114
Query 123 TCAGGTGACCATACAAACAATATACTCCAAAGCTGGAATGCCACTCACGTTACTCCATGT 182
|| ||||| | |||||| |||| ||||||||||||| |||||| ||||||||||||
Sbjct 115 TC---TGACC---CTAACAATGTACTTCAAAGCTGGAATGTCACTCATGTTACTCCATGT 168
Query 183 TCAT-GGTTTCATGTTACTTGCAATACTGAAAACAGTGTTACTCGTCTTGACCTGGGGAG 241
|||| ||||| || | |||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 169 TCATGGGTTT-ATATAACTTGCAATAGTGAAAACAGTGTTACTCGTGTTGACCTGGGAAA 227
Query 242 TGCTAATCTATCTGGAGAACTGGTGCCACAGCTTGCTCAGCTTCCAAATTTGCAGTACTT 301
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 228 TGTTAATCTATCTGGAGAACTGGTGCCACAGCTTGGTCAGCTTCCAAACTTGCAGTACTT 287
Query 302 GGAACTTTTTAACAATAATATTACTGGGGAGATACCTGAGGAGCTTGGCGACTTGATGGA 361
||| |||| || |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 288 GGAGCTTTATAGCAATAACATTACTGGGGAGATACCTGAGGAGCTTGGCAACTTGATGGA 347
Query 362 ACTAGTAAGCTTGGACCTTTTTGCAAACAACATAAGCGGTCCCATCCCTTCCTCTCTTGG 421
||||||||||||||| |||| || |||| |||||| |||||||||||||| ||||||||
Sbjct 348 ACTAGTAAGCTTGGATCTTTACGCGAACAGCATAAGTGGTCCCATCCCTTCGTCTCTTGG 407
Query 422 CAAACTAGGAAAACTCCGCTTCTTGCGTCTTTATAACAACAGCTTATCTGGAGAAATTCC 481
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 408 CAAACTAGGAAAACTCCGGTTCTTGCGTCTTAATAACAACAGCTTATCTGGAGAAATTCC 467
Query 482 AAGGTCTTTGACTGCTCTGCCGCTGGATGTTCTTGATATCTCAAACAATCGGCTCAGTGG 541
|||||||||||||||| |||| ||| | | ||| ||| ||||||||||||||||||||||
Sbjct 468 AAGGTCTTTGACTGCTGTGCCACTGCAGGATCTGGATGTCTCAAACAATCGGCTCAGTGG 527
Query 542 AGATATTCCTGTTAATGGTTCCTTTTCGCAGTTCACTTCTATGAGTTTTGCCAATAATAA 601
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 528 AGATATTCCTGTAAATGGTTCTTTTTCGCAGTTCACTTCTATTAGTTTTGCCAATAATAA 587
Query 602 ATTAAGGCCGCGACCTGCATCTCCTTCACCATCACCTTCAGGAACGTCTGCAGCAATAGT 661
||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct 588 TTTAAGGCCGCGACCTGCATCTTCACCACCATCACCTTCAGGAATGACTGCAGCAATAGC 647
Query 662 AGTGGGAGTTGCTGCGGGTGCAGCACTTCTATTTGCGCTTGCTTGGTGGCTGAGAAGAAA 721
|| |||||||| ||| ||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 648 AGGGGGAGTTGTTGCAGGTGCGGCACTTCTATTTGCGCTTGCTTGGTGGATGAAAAGAAA 707
Query 722 ACTGCAGGGTCACTTTCTTGATGTACCTGCTGAAGAAGACCCAGAGGTTTATTTAGGACA 781
|||||||| ||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||
Sbjct 708 ACTGCAGGATCACTTTTTTGATGTACCTGTTGAGGAAGATCCAGAGGTTCATTTAGGACA 767
Query 782 ATTTAAAAGGTTCTCCTTGCGTGAACTGCTAGTTGCTACAGAGAAATTTAGCAAAAGAAA 841
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATTTAAAAGGTTTTCCTTGCGTGAACTGCTAGTTGCTACAGAGAAATTTAGCAAAAGAAA 827
Query 842 TGTATTGGGCAAAGGACGTTTTGGTATATTGTATAAAGGACGTTTAGCTGATGACACTCT 901
||||||||| ||||||||||||||| | ||||||||||||||||||| |||| | ||||
Sbjct 828 TGTATTGGGTGAAGGACGTTTTGGTAAAGTGTATAAAGGACGTTTAGCCGATGGCTCTCT 887
Query 902 AGTGGCTGTGAAACGGCTAA-ATGAAGAACGTACCAAGGGTGGGGAACTGCAGTTTCAAA 960
||||||||||||| |||||| | |||||| ||||||||||| || |||||||||| ||||
Sbjct 888 AGTGGCTGTGAAAAGGCTAAGA-GAAGAATGTACCAAGGGTAGGAAACTGCAGTTCCAAA 946
Query 961 CCGAAGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCGGCTTCGTGGCTTTT 1020
| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 947 CTGAGGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCGGCTTCATGGTTTTT 1006
Query 1021 GCATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GCATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTT 1066
Query 1081 CTTGTTTAAGAGAGCGTCCTGAAGGCAATCCAGCC-CTTGACTGGCCAAAAAGAAAGCAT 1139
||||||||| ||| |||||||||||||||||| || ||||| ||| ||||||||||| ||
Sbjct 1067 CTTGTTTAAAAGAACGTCCTGAAGGCAATCCA-CCACTTGATTGGGCAAAAAGAAAGAAT 1125
Query 1140 ATTGCTCTGGGATCAGCAAGGGGGCTCGCATATTTACACGATCATTGCGACCAAAAGATC 1199
|||||| |||||||||||||||||||||| ||| |||| |||||| || ||||||| |||
Sbjct 1126 ATTGCTTTGGGATCAGCAAGGGGGCTCGCGTATCTACATGATCATGGCAACCAAAAAATC 1185
Query 1200 ATTCACCTGGATGTGAAAGCTGCAAATATACTGTTAGATGAAGAGTTTGAAGCTGTTGTT 1259
||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1186 ATTCACCGGGATGTGAAAGCTGCGAATATATTGTTAGATGAAGAGTTTGAAGCTGTTGTT 1245
Query 1260 GGAGATTTTGGGCTAGCAAAATTAATGAATTATAACGACTCCCATGTGACAACTGCTGTA 1319
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1246 GGAGATTTTGGGCTCGCAAAATTAATGAATTATAACGACTCCCATGTGACAACTGCGGTA 1305
Query 1320 CGGGGTACGA-TTGGCCATATAGCGCCCGAGTACCTCTCGACAGGAAAATCTTCTGAGAA 1378
|| ||||| | ||||||||||||| || |||||| | |||||||||||||||||||||||
Sbjct 1306 CGCGGTAC-ATTTGGCCATATAGCTCCTGAGTACTTTTCGACAGGAAAATCTTCTGAGAA 1364
Query 1379 GACTGATGTTTTTGGGTACGGGGTCATGCTTCTCGAGCTCATCACTGGACA-AAAGGCTT 1437
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1365 AACTGATGTTTTTGGATACGGGGTCATGCTTCTCGAGCTCATCACTGGACAGAAA-GCTT 1423
Query 1438 TCGATCTTGCTCGGCTTGCAAATGATGATGATATCATGTTACTCGACTGGGTGAAAGAGG 1497
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TCGATCTTGCTCGGCTTGCTAATGATGATGATATCATGTTACTCGACTGGGTGAAAGAGG 1483
Query 1498 TTTTGAAAGAGAAGAAGTTGGAAAGCCTTGTGGATGCAGAACTCGAAGGAAAGTACGTGG 1557
||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 1484 TTTTGAAAGAGAAGAAGTTGGAAAGCCTTGTTGACGCAGAGCTTGAAGGAAAGTACGTGG 1543
Query 1558 AAACAGAAGTGGAGCAGCTGATACAAATGGCTCTGCTCTGCACTCAAAGTTCTGCAATGG 1617
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1544 AAACAGAAGTGGAGCAGCTGATTCAAATGGCTCTGCTCTGCACTCAAAGTTCTGCGATGG 1603
Query 1618 AACGTCCAAAGATGTCAGAAGTAGTGAGAATGCTGGAAGGAGATGGTTTAGCTGAGAGAT 1677
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1604 AACGTCCCAAGATGTCAGAAGTAGTGAGAATGCTGGAAGGAGATGGTTTAGCTGAGCGAT 1663
Query 1678 GGGAAGAATGGCAAAAGGAGGAGATGCCAATACATGATTTTAACTATCAAGCCTATCCTC 1737
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1664 GGGAAGACTGGCAAAAGGAGGAGATGCCAATACATGATTTTAATTATCAAGCCTATCCTC 1723
Query 1738 ATGCTGGCACTGACTGGCTCATCCCCTATTCCAATTCCCTTATCGAAAACGATTACCCCT 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 ATGCTGGCACTGACTGGCTCATCCCCTATTCCAATTCCCTTATCGAAAACGATTACCCCT 1783
Query 1798 CGGGGCCAAGATAA 1811
| || |||||||||
Sbjct 1784 CAGGTCCAAGATAA 1797
> Ahg931117 jgi|Araly1|931117|scaffold_303574.1
Length=1903
Score = 2220 bits (1202), Expect = 0.0
Identities = 1592/1773 (90%), Gaps = 56/1773 (3%)
Strand=Plus/Plus
Query 108 AGAAGCAGTTTATCATCAGGTGA-CCATACAAACAATATACTCCAAAGCTGGAATGCCAC 166
|||| |||||||||||||||||| ||| |||||||| |||||||||||||| |||| ||
Sbjct 138 AGAAACAGTTTATCATCAGGTGACCCA-GCAAACAATGTACTCCAAAGCTGGGATGCTAC 196
Query 167 TCACGTTACTCCATGTTCATGGTTTCATGTTACTTGCAATACTGAAAACAGTGTTACTCG 226
|| |||||||||||| ||||||||||||||||||||||| |||| || | ||||||||
Sbjct 197 TCTTGTTACTCCATGTACATGGTTTCATGTTACTTGCAATCCTGAGAATAAAGTTACTCG 256
Query 227 TCTTGACCTGGGGAGTGCTAATCTATCTGGAGAACTGGTGCCACAGCTTGCTCAGCTTCC 286
| ||||||| |||| ||| || ||||||||| ||||||| ||| | |||| ||||||| |
Sbjct 257 TGTTGACCTTGGGAATGCAAAACTATCTGGAAAACTGGTTCCAGAACTTGGTCAGCTTTC 316
Query 287 AAATTTGCAGTACTTGGAACTTTTTAACAATAATATTACTGGGGAGATACCTGAGGAGCT 346
|| |||||||||||||| |||| || |||||| ||||||||||||||||||||||||||
Sbjct 317 TAACTTGCAGTACTTGGAGCTTTATAGCAATAACATTACTGGGGAGATACCTGAGGAGCT 376
Query 347 TGGCGACTTGATGGAACTAGTAAGCTTGGACCTTTTTGCAAACAACATAAGCGGTCCCAT 406
|||| ||||||||||||||||||||||||| |||| || |||| |||||| ||||||||
Sbjct 377 TGGCAACTTGATGGAACTAGTAAGCTTGGATCTTTACGCGAACAGCATAAGTGGTCCCAT 436
Query 407 CCCTTCCTCTCTTGGCAAACTAGGAAAACTCCGCTTCTTGCGTCTTTATAACAACAGCTT 466
|||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 437 CCCTTCGTCTCTTGGCAAACTAGGAAAACTCCGGTTCTTGCGTCTTAATAACAATAGCTT 496
Query 467 ATCTGGAGAAATTCCAAGGTCTTTGACTGCTCTGCCGCTGGATGTTCTTGATATCTCAAA 526
||| ||||||||||||| | ||||||||||| || |||| | ||||| |||||||||||
Sbjct 497 ATCAGGAGAAATTCCAATGACTTTGACTGCTGTGAAGCTGCAAGTTCTGGATATCTCAAA 556
Query 527 CAATCGGCTCAGTGGAGATATTCCTGTTAATGGTTCCTTTTCGCAGTTCACTTCTATGAG 586
||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 557 CAATCGGCTTAGTGGAGATATTCCTGTTAATGGTTCCTTTTCGCTCTTCACTCCTATTAG 616
Query 587 TTTTGCCAATAATAAATTAA--G-GCC-GC-G-ACCT--G--------CA--TCTCCT-- 626
|||| |||||||| |||| | ||| || | |||| | || ||||||
Sbjct 617 TTTTAAGAATAATAACTTAACGGCGCCTGCTGAACCTCCGCCTACTTCCACTTCTCCTAC 676
Query 627 -TCACCATCACCTTCA--G-G---AACGTCTGCAGCAATAGTAGTGGGAGTTGCTGCGGG 679
||||| |||||||| | | || | |||||||||||| || |||||||||||| ||
Sbjct 677 GCCACCACCACCTTCAGGGAGTCAAATGACTGCAGCAATAGCAGGGGGAGTTGCTGCAGG 736
Query 680 TGCAGCACTTCTA--T--T-T----G-C---GC--TTGCTTGGTGGCTGAGAAGAAAACT 724
||||||||||||| | | | | | || ||||||||||||| ||||||||||
Sbjct 737 TGCAGCACTTCTATTTGCTGTCCCAGCCATTGCGTTTGCTTGGTGGCTCAGAAGAAAACC 796
Query 725 GCAGGGTCACTTTCTTGATGTACCTGCTGAAGAAGACCCAGAGGTTTATTTAGGACAATT 784
|||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 797 ACAGGACCACTTTTTTGATGTACCTGCTGAAGAAGACCCAGAGGTTCATTTAGGACAACT 856
Query 785 TAAAAGGTTCT-CCTTGCGTGAACTGCTAGTTGCTACAGAGAAATTTAGCAA-AAGAAAT 842
|||||||| | |||||||||||||| ||||||||||||| || |||||||| || ||||
Sbjct 857 CAAAAGGTT-TACCTTGCGTGAACTGTTAGTTGCTACAGATAACTTTAGCAATAA-AAAT 914
Query 843 GTATTGGGCAAAGGACGTTTTGGTATATTGTATAAAGGACGTTTAGCTGATGACACTCTA 902
|||||||| | ||| ||||||||| | ||||||||||||||||||| |||| || ||||
Sbjct 915 GTATTGGGTAGAGGTGGTTTTGGTAAAGTGTATAAAGGACGTTTAGCCGATGGCAATCTA 974
Query 903 GTGGCTGTGAAACGGCTAAATGAAGAACGTACCAAGGGTGGGGAACTGCAGTTTCAAACC 962
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 975 GTGGCTGTGAAAAGGCTAAAAGAAGAACGTACCAAGGGTGGGGAACTGCAGTTTCAAACC 1034
Query 963 GAAGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCGGCTTCGTGGCTTTTGC 1022
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GAGGTTGAGATGATCAGTATGGCCGTTCATAGGAACTTGCTTCGGCTTCGTGGCTTTTGC 1094
Query 1023 ATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCT 1082
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1095 ATGACTCCAACTGAAAGATTACTTGTTTATCCCTACATGGCCAATGGAAGTGTTGCTTCA 1154
Query 1083 TGTTTAAGAGAGCGTCCTGAAGGCAATCCAGCC-CTTGACTGGCCAAAAAGAAAGCATAT 1141
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1155 TGTTTAAGAGAGCGTCCTGAAGGCAATCCA-CCACTTGATTGGCCAAAAAGAAAGCATAT 1213
Query 1142 TGCTCTGGGATCAGCAAGGGGGCTCGCATATTTACACGATCATTGCGACCA-AAAGATCA 1200
|||||||||||||||||| |||||||| |||||||| ||||| || ||||| ||| ||||
Sbjct 1214 TGCTCTGGGATCAGCAAGAGGGCTCGCGTATTTACATGATCACTGTGACCAGAAA-ATCA 1272
Query 1201 TTCACCTGGATGTGAAAGCTGCAAATATACTGTTAGATGAAGAGTTTGAAGCTGTTGTTG 1260
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1273 TTCACCGGGATGTGAAAGCTGCAAATATATTGTTAGATGAAGAGTTTGAAGCTGTTGTTG 1332
Query 1261 GAGATTTTGGGCTAGCAAAATTAATGAATTATAACGACTCCCATGTGACAACTGCTGTAC 1320
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1333 GAGATTTTGGGCTCGCAAAATTAATGAATTACAACGAATCCCATGTGACAACTGCTGTAC 1392
Query 1321 GGGGTACGATTGGCCATATAGCGCCC-GAGTACCTCTCGACAGGAAAATCTTCTGAGAAG 1379
| ||||| |||||||||||||| ||| |||||||| |||||||||| ||||||||||||
Sbjct 1393 GTGGTACAATTGGCCATATAGC-CCCTGAGTACCTTTCGACAGGAACATCTTCTGAGAAA 1451
Query 1380 ACTGATGTTTTTGGGTACGGGGTCATGCTTCTCGAGCTCATCACTGGACA-AAAGGCTTT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1452 ACTGATGTTTTTGGGTACGGGGTCATGCTTCTCGAGCTCATCACTGGACAGAAAG-CTTT 1510
Query 1439 CGATCTTGCTCGGCTTGCAAATGATGATGATATCATGTTACTCGACTGGGTGAAAGAGGT 1498
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1511 TGATCTTGCTCGGCTTGCTAATGATGATGATATCATGTTACTCGACTGGGTGAAAGAAGT 1570
Query 1499 TTTGAAAGAGAAGAAGTTGGAAAGCCTTGTGGATGCAGAACTCGAAGGAAAGTACGTGGA 1558
||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 1571 GTTGAAAGAGAAGAAGTTGGAAAGCCTTGTTGACGCAGAGCTTGAAGGAAAGTACGTGGA 1630
Query 1559 AACAGAAGTGGAGCAGCTGATACAAATGGCTCTGCTCTGCACTCAAAGTTCTGCAATGGA 1618
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1631 AGCAGAAGTGGAGCAGCTGATTCAAATGGCTCTGCTCTGCACTCAAAGTTCTGCAATGGA 1690
Query 1619 ACGTCCAAAGATGTCAGAAGTAGTGAGAATGCTGGAAGGAGATGGTTTAGCTGAGAGATG 1678
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1691 ACGTCCAAAGATGTCAGAAGTGGTGAGAATGCTGGAAGGAGATGGTTTAGCTGAGAGATG 1750
Query 1679 GGAAGAATGGCAAAAGGAGGAGATGCCAATACATGATTTTAACTATCAAGCCTATCCTCA 1738
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1751 GGAAGAGTGGCAAAAGGAGGAGATGCCAATACATGATTTTAATTATCAAGCCTATCCTCA 1810
Query 1739 TGCTGGCACTGACTGGCTCATCCCCTATTCCAATTCCCTTATCGAAAACGATTACCCCTC 1798
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 TGCTGGCACTGAATGGCTCATCCCCTATTCCAATTCCCTTATCGAAAACGATTACCCCTC 1870
Query 1799 GGGGCCAAGATAACCTTTTAGAAAGGGTCATTT 1831
|| |||||||||||||| ||||||||||||||
Sbjct 1871 AGGTCCAAGATAACCTTTAAGAAAGGGTCATTT 1903
> Ahg491347 jgi|Araly1|491347|fgenesh2_kg.7__780__AT4G33430.1
Length=2444
Score = 1007 bits (545), Expect = 0.0
Identities = 947/1138 (83%), Gaps = 40/1138 (4%)
Strand=Plus/Plus
Query 694 TTGCGCTTGCTTGGTGGCTG-A-GAAGAAAACTGCAGGGTCACTTTC-TTGATGTACCTG 750
|||| ||||||||||||| | | ||| ||||| |||| ||| ||| |||||||||| |
Sbjct 1119 TTGCACTTGCTTGGTGGC-GAAGGAA-AAAACCACAGGACCAC-TTCTTTGATGTACCAG 1175
Query 751 CTGAAGAAGACCCAGAGGTTTATTTAGGACAATTTAAAAGGTTCTCCTTGCGTGAACTGC 810
||||||| |||||||||||| ||||||||||| | || ||||| || ||||||||||| |
Sbjct 1176 CTGAAGAGGACCCAGAGGTTCATTTAGGACAACTCAAGAGGTTTTCATTGCGTGAACTAC 1235
Query 811 TAGTTGCTACAGAGAAATTTAGCAAAAGAAATGTATTGGGCAAAGGACGTTTTGGTATA- 869
||||||| | || || |||||||| ||||| ||||||| | ||| ||||||||| |
Sbjct 1236 AAGTTGCTTCGGATAATTTTAGCAACAGAAACATATTGGGTAGAGGTGGTTTTGGTAAAG 1295
Query 870 TTGTATAAAGGACGTTTAGCTGATGACACTCTAGTGGCTGTGAAACGGCTAAATGAAGAA 929
|| ||||||||||| |||||||||| ||| ||||||| || ||| ||||||| || ||
Sbjct 1296 TT-TATAAAGGACGGTTAGCTGATGGTACTTTAGTGGCGGTTAAAAGGCTAAAAGAGGAG 1354
Query 930 CGTA-CCAAGGGTGGGGAACTGCAGTTTCAAACCGAAGTTGAGATGATCAGTATGGCCGT 988
|| | |||| ||||| ||||||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 1355 CGCACCCAA-GGTGGTGAACTGCAGTTCCAGACCGAGGTTGAGATGATTAGTATGGCGGT 1413
Query 989 TCATAGGAACTTGCTTCGGCTTCGTGGCTTTTGCATGACTCCAACTGAAAGATTACTTGT 1048
||| || |||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1414 TCACAGAAACTTGCTTCGGCTTCGTGGATTTTGCATGACTCCAACCGAAAGATTGCTTGT 1473
Query 1049 TTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGTTTAAGAGAGCGTCCTGAAGGCA- 1107
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| | |
Sbjct 1474 TTATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAACGTCCTGA-GTCCC 1532
Query 1108 ATCCAGCC-CTTGACTGGCCAAAAAGAAAGCATATTGC-TCTGGGATCAGCAAGGGGGCT 1165
| ||| || ||||| |||||||| ||| ||| |||||| | ||||||| ||||| |||||
Sbjct 1533 AGCCA-CCACTTGATTGGCCAAAGAGACAGCGTATTGCGT-TGGGATCTGCAAGAGGGCT 1590
Query 1166 CGCATATTTACACGATCATTGCGACCAAAAGATCATTCACCTG-GATGTGAAAGCTGCAA 1224
||||||||||| |||||||| |||| |||||| ||||| | | ||||||||||||||||
Sbjct 1591 TGCATATTTACATGATCATTGTGACCCAAAGATTATTCATC-GAGATGTGAAAGCTGCAA 1649
Query 1225 ATATACTGTTAGATGAAGAGTTTGAAGCTGTTGTTGGAGATTTTGGGCTAGCAAAATTAA 1284
|||| | || ||||||||||||||||| || ||||| |||||||| || |||||| | |
Sbjct 1650 ATATTTTATTGGATGAAGAGTTTGAAGCCGTGGTTGGGGATTTTGGACTTGCAAAACTCA 1709
Query 1285 TGAATTATAACGACTCCCATGTGACAACTGCTGTACGGGGTACGATTGGCCATATAGCGC 1344
|| | || || ||| | || |||||||| || || || ||||| ||||| |||||||| |
Sbjct 1710 TGGACTACAAAGACACACACGTGACAACCGCAGTGCGTGGTACAATTGGTCATATAGC-C 1768
Query 1345 CC-GAGTACCTCTCGACAGGAAAATCTTCTGAGAAGACTGATGTTTTTGGGTACGGGGTC 1403
|| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || |||
Sbjct 1769 CCTGAGTACCTTTCTACAGGAAAATCATCAGAGAAAACCGATGTCTTTGGGTATGGAGTC 1828
Query 1404 ATGCTTCTCGAGCTCATCACTGGACAAAAGGCTTTCGATCTTGCTCGGCTTGCAAATGAT 1463
|||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1829 ATGCTTCTTGAGCTTATCACTGGACAAAGGGCTTTCGATCTTGCTCGCCTTGCAAATGAT 1888
Query 1464 GATGATATCATGTTACTCGACTGGGTGAAAGAGGTT-TTGAAAGAGAAGAAGTTGGAAAG 1522
|||||| |||||||||| ||||||||||||| |||| || ||||||||||| |||||| |
Sbjct 1889 GATGATGTCATGTTACTAGACTGGGTGAAAG-GGTTGTTAAAAGAGAAGAAATTGGAA-G 1946
Query 1523 C-CTTGTGGATGCAGAACT-CGAAGGAAAGTACGTGGAA-ACAGAAGTGGAGCAGCTGAT 1579
| || || |||| || || | | || || ||| | || | ||||||||||||||||||
Sbjct 1947 CACTAGTAGATGTTGATCTTC-AGGGGAATTACATAGACGA-AGAAGTGGAGCAGCTGAT 2004
Query 1580 ACAAATGGCTCTGCTCTGCACTCAAAGTTCTGCAATGGAACGTCC-AAAGATGTCAGAAG 1638
||| ||||||||||||||||||| ||||| |||||||| | || ||| ||||| ||||
Sbjct 2005 TCAAGTGGCTCTGCTCTGCACTCAGAGTTCACCAATGGAAAGACCCAAA-ATGTCTGAAG 2063
Query 1639 TAGTGAGAATGCTGGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAATGGCAAAAGGAGG 1698
| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2064 TTGTAAGAATGCTTGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGG 2123
Query 1699 AGATGC-CAATACATGATTTTAACTATC-AAGCCTATCCTC-ATGCTGGCA-CTGACTGG 1754
| ||| || ||| ||||| ||||| | || || ||| || | || | | ||| ||||
Sbjct 2124 AAATGTTCAG-ACAAGATTTCAACTACCCAACCC-ATCATCCA-GCCGT-ATCTGGCTGG 2179
Query 1755 CTCATCCCCT-ATTCCAATTCCCTTATCGAAAACGATTACCCCTCGGGGCCAAGATAA 1811
|||| | |||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct 2180 ATCATTGG-TGATTCCACTTCCCAGATCGAAAACGAGTACCCCTCGGGTCCAAGATAA 2236
Score = 359 bits (194), Expect = 5e-98
Identities = 460/584 (79%), Gaps = 35/584 (6%)
Strand=Plus/Plus
Query 9 GAACATGGATCATCCCGTGGCTT-TATTTGGCTGATTCT-ATTTCTCGATTTTGTTTC-C 65
||| || ||| ||||| | |||| | ||||| ||||||| ||| | || |||| ||| |
Sbjct 390 GAAGATTGATGATCCC-TTGCTTCT-TTTGGTTGATTCTCGTTT-TGGA-TTTGGTTCTC 445
Query 66 AGAGTCACCGGAAAAACAC-AAGTTGATGCTCTCATTGCTCT-AAGAAGCAGTTTATCAT 123
|||||| | || || | | ||| ||||||||| | ||| || || || ||| | | |
Sbjct 446 AGAGTCTCGGGCAACGC-CGAAGGTGATGCTCTGAGTGCACTGAA-AAACAG--T-T--T 498
Query 124 CAGGTGACCATACAAACAATATACTCCAAAGCTGGAATGCCACTCACGTTACTCCATGTT 183
|| ||||| | ||||| | || ||||||||| |||| |||| || |||||||||
Sbjct 499 -AGCTGACC---CCAACAAGGTGCTTCAAAGCTGGGATGCGACTCTTGTCACTCCATGTA 554
Query 184 CATGGTTTCATGTTACTTGCAATA-CTGAAAACAGTGTTACTCGTCTTGACCTGGGGAGT 242
|||||||||||||||||||||||| | || || || ||||| ||| ||||||| || | |
Sbjct 555 CATGGTTTCATGTTACTTGCAATAGC-GATAATAGCGTTACACGTGTTGACCTTGGCAAT 613
Query 243 GCTAATCTATCTGGAGAACTGGTGCCACAGCTTGCTCAGCTTCCAAATTTGCAGTACTTG 302
|| |||||||||||| | || || || |||| |||||||||||| ||||||||||||
Sbjct 614 GCAAATCTATCTGGACAGCTCGTAATGCAACTTGGTCAGCTTCCAAACTTGCAGTACTTG 673
Query 303 GAACTTTTTAACAATAATATTACTGGGGA-GATACCTGAGGAGCTTGGCGACTTGATGGA 361
|| |||| || |||||| |||||| |||| || || ||| ||||||| | |||| |||
Sbjct 674 GAGCTTTATAGCAATAACATTACT-GGGACAATCCCAGAGCAGCTTGGAAATTTGACGGA 732
Query 362 ACTAGTAAGCTTGGACCTTT--TTGCAAACAACATAAGCGGTCCCATCCCTTCCTCTCTT 419
| | || |||||||| |||| ||| ||||| |||||||||| ||||| || ||||
Sbjct 733 ATTGGTGAGCTTGGATCTTTACTTG--AACAATTTAAGCGGTCCTATCCCATCAACTCTC 790
Query 420 GGCAAAC-TAGGAAAACTCCGCTTCTTGCGTCTTTATAACAACAGCTTATCTGGAGAAAT 478
||| || || | |||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 791 GGCCGACTTAAG-AAACTCCGTTTCTTGCGTCTTAATAACAATAGCTTATCTGGAGAAAT 849
Query 479 TCCAAGGTCTTTGACTGC--T-CTGCCGCTGGATGTTCTTGATATCTCAAACAATCGG-C 534
|||||||||| ||||||| | ||| ||||| | ||||| ||| ||||||| ||| || |
Sbjct 850 TCCAAGGTCTCTGACTGCTGTCCTGACGCTGCAAGTTCTGGATCTCTCAAATAAT-GGTC 908
Query 535 TCAGTGGAGATATTCCTGTTAATGGTTCCTTTTCGCAGTTCACT 578
||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 909 TCACTGGAGATATTCCTGTTAATGGTTCCTTTTCACTTTTCACT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5