BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13810.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480324 jgi|Araly1|480324|fgenesh2_kg.3__3025__AT2G13810.1 2414 0.0
> Ahg480324 jgi|Araly1|480324|fgenesh2_kg.3__3025__AT2G13810.1
Length=1501
Score = 2414 bits (1307), Expect = 0.0
Identities = 1437/1501 (96%), Gaps = 3/1501 (0%)
Strand=Plus/Plus
Query 17 GAAGCCGTCATAACTTGCAAGTAAAGAATGGTCAGTCTAATGTTCTTTAGTTCGGCCTCA 76
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GAAGCTGTCATAACTTGCAAGTAAAGAATGGTCAGTCTAATGTTCTGTAGTTCGGCCTCA 60
Query 77 CCTTTATGCTCTTCTCCATCAAAAATTCCCAAGGCTAGTTTGGACTTCGAGATGAAGAAA 136
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 61 CCTTTATGCTCTTCTCCATCAAAAATTACCAAGGCTAGTTTGGACTTCGATATGAAGAAA 120
Query 137 CTTGGTGGCAGCACAAAACTTGTTCGGAACGTGAATTTGGAGAAACTAAAGAACAATTAT 196
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGGTGGCAGCACAAAACTTGTCCGGAACGTGAATTTGGAGAAACTAAAGAACAATTAT 180
Query 197 TTGTTTCCTGAAATCAACAGACGTGAACTTGAGCACATTGAAAAGCATCCAAATGTACAA 256
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTGTTTCTTGAAATCAACAGACGTGAGCTTGAGCACATTGAAAAGCATCCAAATGTACAA 240
Query 257 TTGATAAGCCTTGGGACTGGTGATACAACAGAGCCTATTCCAGAGCAAATAACCTCACAT 316
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 241 TTGATAAGCCTTGGGACTGGTGATACAACAAAGCCTATACCAGAGCAAATAACCTCACAT 300
Query 317 ATGTCTAACTTCGCACATGGCCTATCGACCGTAGAAGGATATAGAGGGTATGGGTTGGAA 376
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 301 ATGTCTAACTTCGCACATGGCCTATCGACGGTAGAAGGAAATAGAGGGTATGGACTGGAA 360
Query 377 CAAGGAAATAAGACCCTGCGAAAAGCTATTGCTGAAACGTTTTATAGAGATTTGCACGTA 436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 CAAGGAAATAAGACCCTGCGAAAAGCTATTGCTGAAACGTTTTATAGAGATCTGCACGTA 420
Query 437 AAAAGCAATGAAGTTTTTGTATCAGATGGTGCACAAAGTGATATTTCTCGTCTTCAGCTA 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 AAAAGCAATGAAGTTTTTGTATCAGATGGTGCACAAAGTGATATTTCTCGTCTTCAGTTA 480
Query 497 CTCTTAGGCTCCAACGTCACAATTGCTGTGCAAGATCCTACCTTCCCGGCTTACATAGAT 556
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCCTAGGCTCCAACGTCACAATTGCTGTGCAAGATCCTACCTTCCCGGCTTACATAGAT 540
Query 557 TCAAGTGTGATAATCGGTCAGACTGGTCATTTCCATGAAAAAACCAAGAAGTACCAAAAT 616
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 TCAAGTGTGATAATCGGTCAGACTGGTCATTTCCATGAAACAACCAAGAAGTACCAAAAT 600
Query 617 GTTGTTTACATGCCATGTGGGCCTAACAATAGTTTCTTCCCTGATCTGGCTATGACCCCA 676
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 601 GTTGTCTACATGCCATGTGGGCCTAAAAATAGTTTTTTCCCTGATCTGGCTATGACCCCA 660
Query 677 AGGACCGATGTCATCTTCTTTTGTTCTCCTAATAACCCTACTGGTTATGTTGCATCCAGA 736
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGACTGATGTCATCTTCTTTTGTTCTCCTAATAACCCTACTGGTTATGTTGCATCCAGA 720
Query 737 AAACAACTACATCAACTAGTTGATTTTGCAAAGACCAATGGGTCCATTATTATATTTGAC 796
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 721 AAACAACTACATCAACTAGTTGATTTTGCAAAGAGAAATGGTTCCATAATTATTTTTGAC 780
Query 797 TCCGCATATGCTGCTTTTATCGAAGATGGTAGTCCACGTTCTATATATGAAATTCCTGGT 856
|| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||
Sbjct 781 TCTGCATATGCTGCTTTTATCGAAGACGATAGCCCACGTTCAATATATGAAATTCCTGGT 840
Query 857 GCTAGAGAGGTCGCGATTGAAGTTTCATCATTCTCTAAGTTTGCGGGTTTCACCGGTGTT 916
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GCTAGAGAGGTCGCGATTGAAGTTTCTTCATTCTCTAAGTTTGCGGGTTTCACCGGTGTT 900
Query 917 CGGCTTGGTTGGTCTATCATCCCTGATGAGCTCTTGTACTCTAATGGTTTTCCCATTATC 976
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGGCTTGGTTGGACTATCATCCCTGATGAGCTCTTGTACTCTAATGGTTTTCCCATTATC 960
Query 977 AACGATTTCCATCGTATTGTGACCACTTCCTTCAACGGAGCTTCAAATATTGCTCAGGCT 1036
|||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 961 AACGATTTCCATCGCATAGTTACCACTTCCTTCAATGGAGCTTCAAATATTGCTCAGGCA 1020
Query 1037 GGTGGATTGGCATGCCTTTCTTCTGGTGGCCTTAAGGAGATACGGTCGGTGAACAACTAC 1096
|||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1021 GGTGGACTAGCATGCCTTTCTTCTGGTGGCCTTAAGGAGATACGGTCAGTGAACGACTAC 1080
Query 1097 TACAAAGAGAACAGGAAGATACTGATGGACACTCTAGTCTCGCTTGGCCTCAAGGTTTAT 1156
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 TACAAAGAGAACAGGAAGATACTGATGGACACTCTAGTCTCGCTCGGCCTCAAGGTTTAT 1140
Query 1157 GGTGGTGTAAATGCTCCATACTTGTGGGTTCACTTTAAGGGATCAAAATCGTGGGACGTT 1216
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1141 GGTGGTGTAAATGCTCCATACTTGTGGGTTCACTTCAAGGGATCAAAATCATGGGACATT 1200
Query 1217 TTTAATGAGATTCTTGAAAACACTCATATAATAACAGTACCAGGCTCAGGTTTTGGACCC 1276
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTTGCTGAGATTCTAGAAAACACTCATATAATAACAGTACCAGGCTCAGGTTTTGGACCC 1260
Query 1277 GGTGGAGAAGAGTATTTGAGGATTAGTGGGTTTGGACGCAGAGATCACATTGTTGAAGCA 1336
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 GGTGGAGAAGAGTATTTGAGGATTAGTGGGTTTGGACGCAGAGAGGACATTGTTGAAGCA 1320
Query 1337 TCAAAGAGGTTGCAGAATTTCTTTAACACACGAACCAAACATTTTACTTATCTCTCTTCC 1396
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCGAAGAGGTTGCAGAATTTCTTTAACACACGAACCAAACATTTTACTTATCTCTCTTCC 1380
Query 1397 ACTTCTAATACCAATTAGGATAAATACATCTCGTGTT-ATGTGCATCGTCTTGAATAATT 1455
|||||||||||||||||| |||| |||| |||| || || ||||||||||||||||||
Sbjct 1381 TCTTCTAATACCAATTAGGCTAAACACATATCGTCTTTATAAGCATCGTCTTGAATAATT 1440
Query 1456 TCTTCCACCT--CTTGTACCATAATGTATATTATTGAAATAATAAAAGCTACGAGACCAT 1513
||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1441 TCTCCCACCTATCTTGTACCATAATGTATATTATTGAAATAATAAAAGCTACGGGACCAT 1500
Query 1514 G 1514
|
Sbjct 1501 G 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5