BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13820.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480325 jgi|Araly1|480325|fgenesh2_kg.3__3026__AT2G13820.1 760 0.0
> Ahg480325 jgi|Araly1|480325|fgenesh2_kg.3__3026__AT2G13820.1
Length=575
Score = 760 bits (411), Expect = 0.0
Identities = 523/577 (91%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 56 ATGTCCGGCGAGAGAGCTCATGCAGCAGTGGACTGCTCATCGTTGATACTAAACATGGCT 115
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCCGGCGAGAGCGTTCATGCAGCAGTGGACTGCTCATCGTTGATACTAAACATGGCT 60
Query 116 GATTGTTTGTCGTTTGTGACTAGTGGTAGTACAGTTGTCAAGCCGGAAGGAACATGTTGT 175
|||||||||||||| ||||||||||||||||| || || ||||| |||||||||||||||
Sbjct 61 GATTGTTTGTCGTTCGTGACTAGTGGTAGTACCGTGGTGAAGCCAGAAGGAACATGTTGT 120
Query 176 TCAGGGCTTAAGACTGTGGTTAGGACAGGACCAGAATGTCTATGTGAGGCTTTCAAGAAC 235
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGGGCTTAAGACTGTGGTTAGGTCAGGACCAGAATGTCTATGTGAGGCTTTCAAGAAT 180
Query 236 AGTGGTTCTCTTGGT-TTAACTCTTGATCTTTCTAAAGCTGCTTCTCTTCCTTCTGTTTG 294
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGCTTCTCTTGGTGTTA-CTCTTGATCTTTCTAAAGCTGCTTCTCTTCCTTCTGTTTG 239
Query 295 TAAAGTTGCTGCTCCTCCTTCTGCTCGTTGTGGCCTTTCTGTCTCTGGAGATCCTCCTGC 354
|||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct 240 TAAAGTTGCTGCTCCTCCGTCTGCTCGTTGTGGCCTTTCTGTCGCTGGATCTCCTCCTGC 299
Query 355 TACTGCCCCTGGTTTATCTCCTACGGCCGGAGCAGGAGCACCCGCGTTGTCCAGTGGTGC 414
||||||||||||||||||||| ||||||| ||| || ||||| | | ||||||| || ||
Sbjct 300 TACTGCCCCTGGTTTATCTCCCACGGCCGAAGCTGGTGCACCGGAGGTGTCCAGAGGAGC 359
Query 415 AAATGCGGCAACTCCAGTTTCGTCCCCGAGGAGTTCCGATGCGTCCTTGCTCTCTGTATC 474
|||||| ||||| |||||| |||||||||| ||||||||||||||| ||| |||| | ||
Sbjct 360 AAATGCCGCAACCCCAGTTCCGTCCCCGAGAAGTTCCGATGCGTCCATGCGCTCTATGTC 419
Query 475 TTTTGCATTTGTCATCTTCATGGCACTCATTTCTTCTTTCTATTGAGTCTTAAAATTTAA 534
|| |||| | ||||||||||||||||||||||||||||| |||||| ||| ||| |||
Sbjct 420 GTTCGCATCTATCATCTTCATGGCACTCATTTCTTCTTTCAATTGAGCCTTGCAATCTAA 479
Query 535 TTGCTTCTTGTTGAGTTATTTTTGTTTGCTATGTAGCTGAAGAGTTTGGTGTTACTGATC 594
|||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 480 TTGCTTCTA-TTGAGTTCTTTTTGTTTGCTATGTAGCTGAAGAGTTTGGTGTTCCTAATC 538
Query 595 ATATTT-ACCTTTCATGT-GT--CAATTTTAATGAGA 627
|| ||| ||||||||||| || ||||| || |||||
Sbjct 539 ATTTTTTACCTTTCATGTTGTGTCAATTCTACTGAGA 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5