BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G13840.1 Length=1438 Score E Sequences producing significant alignments: (Bits) Value Ahg931123 jgi|Araly1|931123|scaffold_303580.1 2080 0.0 > Ahg931123 jgi|Araly1|931123|scaffold_303580.1 Length=1346 Score = 2080 bits (1126), Expect = 0.0 Identities = 1270/1341 (95%), Gaps = 4/1341 (0%) Strand=Plus/Plus Query 56 CACAATCTCCAACAATGGCTGACGATAAGAAGAAGCGGAACAAGAAGAAGAAGCGTAGTA 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 8 CACAATCTCCAACAATGGCTGACGATAAGAAGAAGCGGAACAAGAAGAAGAAGCGTGGTA 67 Query 116 CTGGTAACAAGAGGAAGATGACCACTGAGCAATCAGAAGCCTTTAAGTCAATCACCGATT 175 ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 68 GTGGTAACAAGAAGAAGATGACCACTGAGCAATCAGAGGCCTTTAAGTCCGTCACCGATT 127 Query 176 GGCTCATCTTAGGTTCTTCTCCATCTCTCTCCTCTTCCTCTGATGACTTTGCCGTCAACA 235 ||||| || |||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 128 GGCTCTTCGTAGGTTCTTCTCCATCTCTCTCCTCTTCCTCTGATGACTTTGCCGTTACCA 187 Query 236 TCAATTCTGGTTCTCTAAGATGTGGAGAGAAAGTT-GTGTTTGAGCTTCATTCTCATTCA 294 |||||||| ||||| | ||||| ||||||||| || ||||| |||||||| ||||||||| Sbjct 188 TCAATTCTAGTTCTTTGAGATGCGGAGAGAAA-TTGGTGTTCGAGCTTCACTCTCATTCA 246 Query 295 AATCGCAGCGATGGGTTTCTATCACCTTCAAAGGTCGTGGAGAGGGCTTATAACAATGGG 354 |||||||||||||||||| |||| || |||||| |||||||||||||| ||||||||||| Sbjct 247 AATCGCAGCGATGGGTTTTTATCGCCGTCAAAGCTCGTGGAGAGGGCTCATAACAATGGG 306 Query 355 GTGAAAGTTCTTTCTTTAACGGATCATGATACTATGGCTGGTGTCCCGGAAGCAGTGGAA 414 |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| Sbjct 307 GTGAAAGTTCTTTCTTTAACGGATCATGATACGATGGCTGGTATCCCGGAAGCTGTGGAA 366 Query 415 GCAGGACGTAGATTCGGTATCAAGATCATTCCGGGTATTGAGATCAGCACATTATTCGGT 474 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 367 GCAGGACGTAGGTTCGGTATCAAGATCATTCCGGGTATTGAGATCAGTACATTATTCGGT 426 Query 475 TTAAGAGACTCCGGGTCTGAGGAGCCAGTGCATATACTTGCGTATTATGGCACTTCCGGT 534 | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 427 TCAAGAGACTCTGGGTCTGAGGAGCCAGTGCATATACTTGCGTACTATGGCACTTCCGGA 486 Query 535 CCAGCATTATATGATGAGTTGGAAGATTTCTTGGTGAAGATAAGAGATGGGCGTTTCGTT 594 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 CCAGCAATGTATGATGAGTTGGAAGATTTCTTGGTGAAGATAAGAGATGGGCGTTTCGTT 546 Query 595 CGTGGGAGAGAAATGGTATTGAAATTGAATAAGCTAAAGATACCTTTAAAATGGGAGCAT 654 || |||||||||||||| ||||||||||||||| | ||| ||||| |||||||||| ||| Sbjct 547 CGCGGGAGAGAAATGGTCTTGAAATTGAATAAGTTGAAGGTACCTCTAAAATGGGAACAT 606 Query 655 GTTACCAGGATTGCAGGCAAGGATGTTGCCCCGGGTAGGATGCATGTAGCCCGAGCGCTT 714 || |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| Sbjct 607 GTCACCAGGATTGCAGGCAAGGATGTTGCTCCGGGTAGAATGCACGTAGCCCGAGCGCTT 666 Query 715 CTTGAAGCAGGCTACGTGGAGAATTTGAGACAAGCTTTCACTAAATATTTACATGATGGT 774 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 CTTGAAGCAGGATACGTGGAGAATTTGAGACAAGCTTTCACTAAATATTTACATGATGGT 726 Query 775 GGACCTGCTTATGCTACAGGGA-CTGAGCCTATGGCCGAGGAAGCAGTAAAACTTATATG 833 |||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 727 GGACCTGCTTATTCCACAGGGAGC-GAGCCTATGGCCGAGGAAGCAGTAAAACTTATATG 785 Query 834 CAAAACCGGTGGTGTAGCTGTGCTTGCACATCCGTGGGCGTTGAAGAATCATGTCGGTAT 893 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | Sbjct 786 CAAAACCGGTGGTGTAGCTGTTCTTGCACATCCGTGGGCGTTGAAGAATCATGTTGGTGT 845 Query 894 TATTAGGAGATTGAAGGATGCTGGACTTCATGGGGTCGAGGTTTATAGGAGCGACGGCAA 953 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| Sbjct 846 TATTAGGAGATTGAAAGATGCTGGACTTCATGGGGTTGAGGTTTATAGGAGCGACAGCAA 905 Query 954 GTTAGAAGTGTTTAGCGAGTTGGCTGATACATACAATCTGCTAAAGCTAGGAGGATCAGA 1013 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 906 GTTAGAAGTGTTTAGCGAGTTGGCTGATACATACAGTCTGCTAAAGCTAGGAGGATCAGA 965 Query 1014 TTATCATGGAAAAGGCGGACGCAATGAATCAGAATTGGGGAGTGTAAACCTTCCCGTGAC 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 966 TTATCATGGAAAAGGCGGACGCAATGAATCAGAATTGGGGAGTGTAAACCTTCCCGTGAC 1025 Query 1074 GGCATTGCAGGACTTCTTGAACGTTGGACGTCCTATATGGTGTGAGGCCATTAAAGCAAC 1133 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1026 GGCATTGCAGGATTTCTTGAACGTTGGACGTCCTCTATGGTGTGAGGCCATTAAAGCAAC 1085 Query 1134 CATGAGAGCATTCCTTGACCAACCATCAGATTCAAACCTCTCCAATATCTTAAGGTTCGA 1193 ||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1086 CATGAAAGCATTTCTTGCCCAACCATCCGATTCAAACCTCTCCAATATCTTAAGGTTCGA 1145 Query 1194 TAAGGCAAGGATTCTGAAAGGAAATTCAGCTTGGTCCTGTGGTAAGGAGTTGATGGACCG 1253 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1146 TAGGGCAAGGATTCTGAAAGGAAATTCAGCTTGGTCCTGTGGTAAGGAGTTGATGGACCG 1205 Query 1254 ATGTTTAGCGATTTGGTTGACCAGTGATGAGAGAAACAGCAATGACTTTGAGGCTCTCAG 1313 ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1206 ATGCTTAGCGATTTGGTTGACGAGTGATGAGAGAAAAAGCAATGACTTTGAGGCTCTCAG 1265 Query 1314 ATTGAAGCTCTCTTTTGTACCAATCATGTCAAACGGAACATGTGTCACAGTTGGTCCTTA 1373 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1266 ATTGAAGCTCTCTTTTGTACCAATCACGTCAAACGGATCATGTGTCACAGTTGGTCCTTA 1325 Query 1374 AATATTTAGTCTGGTCTCTTT 1394 ||| ||| ||||||||||||| Sbjct 1326 AATTTTTGGTCTGGTCTCTTT 1346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53783425940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5