BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G13840.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931123 jgi|Araly1|931123|scaffold_303580.1 2080 0.0
> Ahg931123 jgi|Araly1|931123|scaffold_303580.1
Length=1346
Score = 2080 bits (1126), Expect = 0.0
Identities = 1270/1341 (95%), Gaps = 4/1341 (0%)
Strand=Plus/Plus
Query 56 CACAATCTCCAACAATGGCTGACGATAAGAAGAAGCGGAACAAGAAGAAGAAGCGTAGTA 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 8 CACAATCTCCAACAATGGCTGACGATAAGAAGAAGCGGAACAAGAAGAAGAAGCGTGGTA 67
Query 116 CTGGTAACAAGAGGAAGATGACCACTGAGCAATCAGAAGCCTTTAAGTCAATCACCGATT 175
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 68 GTGGTAACAAGAAGAAGATGACCACTGAGCAATCAGAGGCCTTTAAGTCCGTCACCGATT 127
Query 176 GGCTCATCTTAGGTTCTTCTCCATCTCTCTCCTCTTCCTCTGATGACTTTGCCGTCAACA 235
||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 128 GGCTCTTCGTAGGTTCTTCTCCATCTCTCTCCTCTTCCTCTGATGACTTTGCCGTTACCA 187
Query 236 TCAATTCTGGTTCTCTAAGATGTGGAGAGAAAGTT-GTGTTTGAGCTTCATTCTCATTCA 294
|||||||| ||||| | ||||| ||||||||| || ||||| |||||||| |||||||||
Sbjct 188 TCAATTCTAGTTCTTTGAGATGCGGAGAGAAA-TTGGTGTTCGAGCTTCACTCTCATTCA 246
Query 295 AATCGCAGCGATGGGTTTCTATCACCTTCAAAGGTCGTGGAGAGGGCTTATAACAATGGG 354
|||||||||||||||||| |||| || |||||| |||||||||||||| |||||||||||
Sbjct 247 AATCGCAGCGATGGGTTTTTATCGCCGTCAAAGCTCGTGGAGAGGGCTCATAACAATGGG 306
Query 355 GTGAAAGTTCTTTCTTTAACGGATCATGATACTATGGCTGGTGTCCCGGAAGCAGTGGAA 414
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 307 GTGAAAGTTCTTTCTTTAACGGATCATGATACGATGGCTGGTATCCCGGAAGCTGTGGAA 366
Query 415 GCAGGACGTAGATTCGGTATCAAGATCATTCCGGGTATTGAGATCAGCACATTATTCGGT 474
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 367 GCAGGACGTAGGTTCGGTATCAAGATCATTCCGGGTATTGAGATCAGTACATTATTCGGT 426
Query 475 TTAAGAGACTCCGGGTCTGAGGAGCCAGTGCATATACTTGCGTATTATGGCACTTCCGGT 534
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 427 TCAAGAGACTCTGGGTCTGAGGAGCCAGTGCATATACTTGCGTACTATGGCACTTCCGGA 486
Query 535 CCAGCATTATATGATGAGTTGGAAGATTTCTTGGTGAAGATAAGAGATGGGCGTTTCGTT 594
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CCAGCAATGTATGATGAGTTGGAAGATTTCTTGGTGAAGATAAGAGATGGGCGTTTCGTT 546
Query 595 CGTGGGAGAGAAATGGTATTGAAATTGAATAAGCTAAAGATACCTTTAAAATGGGAGCAT 654
|| |||||||||||||| ||||||||||||||| | ||| ||||| |||||||||| |||
Sbjct 547 CGCGGGAGAGAAATGGTCTTGAAATTGAATAAGTTGAAGGTACCTCTAAAATGGGAACAT 606
Query 655 GTTACCAGGATTGCAGGCAAGGATGTTGCCCCGGGTAGGATGCATGTAGCCCGAGCGCTT 714
|| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 607 GTCACCAGGATTGCAGGCAAGGATGTTGCTCCGGGTAGAATGCACGTAGCCCGAGCGCTT 666
Query 715 CTTGAAGCAGGCTACGTGGAGAATTTGAGACAAGCTTTCACTAAATATTTACATGATGGT 774
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTTGAAGCAGGATACGTGGAGAATTTGAGACAAGCTTTCACTAAATATTTACATGATGGT 726
Query 775 GGACCTGCTTATGCTACAGGGA-CTGAGCCTATGGCCGAGGAAGCAGTAAAACTTATATG 833
|||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 727 GGACCTGCTTATTCCACAGGGAGC-GAGCCTATGGCCGAGGAAGCAGTAAAACTTATATG 785
Query 834 CAAAACCGGTGGTGTAGCTGTGCTTGCACATCCGTGGGCGTTGAAGAATCATGTCGGTAT 893
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 786 CAAAACCGGTGGTGTAGCTGTTCTTGCACATCCGTGGGCGTTGAAGAATCATGTTGGTGT 845
Query 894 TATTAGGAGATTGAAGGATGCTGGACTTCATGGGGTCGAGGTTTATAGGAGCGACGGCAA 953
||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 846 TATTAGGAGATTGAAAGATGCTGGACTTCATGGGGTTGAGGTTTATAGGAGCGACAGCAA 905
Query 954 GTTAGAAGTGTTTAGCGAGTTGGCTGATACATACAATCTGCTAAAGCTAGGAGGATCAGA 1013
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 906 GTTAGAAGTGTTTAGCGAGTTGGCTGATACATACAGTCTGCTAAAGCTAGGAGGATCAGA 965
Query 1014 TTATCATGGAAAAGGCGGACGCAATGAATCAGAATTGGGGAGTGTAAACCTTCCCGTGAC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TTATCATGGAAAAGGCGGACGCAATGAATCAGAATTGGGGAGTGTAAACCTTCCCGTGAC 1025
Query 1074 GGCATTGCAGGACTTCTTGAACGTTGGACGTCCTATATGGTGTGAGGCCATTAAAGCAAC 1133
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1026 GGCATTGCAGGATTTCTTGAACGTTGGACGTCCTCTATGGTGTGAGGCCATTAAAGCAAC 1085
Query 1134 CATGAGAGCATTCCTTGACCAACCATCAGATTCAAACCTCTCCAATATCTTAAGGTTCGA 1193
||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1086 CATGAAAGCATTTCTTGCCCAACCATCCGATTCAAACCTCTCCAATATCTTAAGGTTCGA 1145
Query 1194 TAAGGCAAGGATTCTGAAAGGAAATTCAGCTTGGTCCTGTGGTAAGGAGTTGATGGACCG 1253
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TAGGGCAAGGATTCTGAAAGGAAATTCAGCTTGGTCCTGTGGTAAGGAGTTGATGGACCG 1205
Query 1254 ATGTTTAGCGATTTGGTTGACCAGTGATGAGAGAAACAGCAATGACTTTGAGGCTCTCAG 1313
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1206 ATGCTTAGCGATTTGGTTGACGAGTGATGAGAGAAAAAGCAATGACTTTGAGGCTCTCAG 1265
Query 1314 ATTGAAGCTCTCTTTTGTACCAATCATGTCAAACGGAACATGTGTCACAGTTGGTCCTTA 1373
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1266 ATTGAAGCTCTCTTTTGTACCAATCACGTCAAACGGATCATGTGTCACAGTTGGTCCTTA 1325
Query 1374 AATATTTAGTCTGGTCTCTTT 1394
||| ||| |||||||||||||
Sbjct 1326 AATTTTTGGTCTGGTCTCTTT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5