BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14045.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480328 jgi|Araly1|480328|fgenesh2_kg.3__3029__AT2G14045.1 1009 0.0
> Ahg480328 jgi|Araly1|480328|fgenesh2_kg.3__3029__AT2G14045.1
Length=701
Score = 1009 bits (546), Expect = 0.0
Identities = 654/705 (93%), Gaps = 12/705 (2%)
Strand=Plus/Plus
Query 96 AGAGAGAGCTTTTATTCTTTGGAGGATCTAAATAGGTCCAAGCTCGTCATGCAGCTAGGA 155
|||||||||||||| || ||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 1 AGAGAGAGCTTTTACTCGTTGCAGGATCTAAATAGGTCCAAGCTTGTCATGCAGCTTGGA 60
Query 156 AAAAGAAGAGGATTAATATACAGTTATTAGAAACATTAAAGTTTCTTCTGTGTTTTGTAG 215
||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 61 AAAAGAAGAGGTTTAATATACAGTTATTAGAAACATCAAAGTTTCTTTTGTGTTTTGTCG 120
Query 216 AACAAGGAGATGATGCGGTACAAAGAGGAGAAAGAGGTGAAGAAGGAAGCTTTCAGGAAG 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAAGGAGATGATGCGGTACAAAGAGGAGAAAGAGGTGAAGAAGGAAGCTTTCAGGAAG 180
Query 276 TATTTGGAGTCAAGTGGAGTTCTTGATTCTCTTACTAAAGTTCTGGTTTCTCTGTATGAG 335
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 TATTTGGAGTCCAGTGGAGTTCTTGATTCTCTCACCAAAGTTCTGGTTTCTCTGTATGAG 240
Query 336 CAGAATGACAAGCCTTCCTCTGCTCTAGAATTCATTCAACAAAAGCTAGGTGGTCCATCA 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGAATGACAAGCCTTCCTCTGCTCTAGAATTCATTCAACAAAAGCTAGGTGGTCCATCT 300
Query 396 GTCTCTGACTATGAGAAGCTTCAAGCTGAGAAGTCTGATCTTCAAATAAAGTACAATGAG 455
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 301 GTGTCTGACTATGAGAAGCTTCAAGCTGAGAAGTCTGATCTTCAGATAAAATACAATGAG 360
Query 456 CTTTTGGCTAAACATCAGGAAACCCTGAGAGAGTTAAATGGAGTGAAGAGCTTGCATTCA 515
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CTTTTGGCTAAACATCAGGAAACCCTGAGAGAGTTAAATGGACTGAAGAGCTTGCATTCG 420
Query 516 CGAAACTCTTCAAAAGATGATGCAGACAGAGAGACCCTTGAAG-CTGAACACACGACCTT 574
||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 421 CGAAAGTCTTCAAAAGATGATGCAGACAGAGAGACCCTTGAAGAC-GAACACACGACCCT 479
Query 575 AGTCACTCCTCACCACTAACTCTG-CACTTACTGTATATGTAATTCC--T-GTTACTATC 630
|||||||||||||||||| | || | |||||||||||||||||||| | ||| | |||
Sbjct 480 CGTCACTCCTCACCACTAAATGTGTC-CTTACTGTATATGTAATTCCCATTGTTTCGATC 538
Query 631 TTCGTTTACATATTTACGGCAGTaaaagaaa-aaaaaa-gaacaaaaacaaa-CCACGCA 687
| ||||||| ||||||||||| || ||||| |||||| |||| ||| |||| |||||||
Sbjct 539 TCCGTTTACGCATTTACGGCAGCAATAGAAAGAAAAAAAGAACGAAA-CAAAACCACGCA 597
Query 688 TAGATGAGTTTTCTAGGCAACAATGATTAGTTTCTTTGTTTAAATTTCCATTTGCTCTCT 747
||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 598 TAGATGAGTTTTCCCGGCAACAATGATCA-TTTCTTTGTTTAAATCTCCATTTGCTCTCT 656
Query 748 TTCATTCATCTACATCACCAGTGTTGTAGAGTTTTTACGTAATAA 792
||||||||||||||||||||||||| | ||||||| |||| ||||
Sbjct 657 TTCATTCATCTACATCACCAGTGTTTTGGAGTTTTAACGTTATAA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5