BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14050.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319438 jgi|Araly1|319438|fgenesh1_pm.C_scaffold_3002454 3158 0.0
> Ahg319438 jgi|Araly1|319438|fgenesh1_pm.C_scaffold_3002454
Length=1986
Score = 3158 bits (1710), Expect = 0.0
Identities = 1864/1940 (96%), Gaps = 3/1940 (0%)
Strand=Plus/Plus
Query 63 ATGGAATCGCCGACACAGACGTCTGAGCACATAGAATCCATGACGGAGTTTCTAGTAAAG 122
||||||||||||||||||||| | |||||||| |||||||||||||||||||| | ||||
Sbjct 1 ATGGAATCGCCGACACAGACGGCGGAGCACATTGAATCCATGACGGAGTTTCTGGCAAAG 60
Query 123 CACTACCCCGATCAGCTCCGCGAAATCTCTCTCTCTTCTGATCCCAAACTTCACTACCCT 182
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 CACTATTCCGATCAGCTCCGCGAAATCTCTCTCTCTTCCGATCCCAAACTCCACTACCCT 120
Query 183 CTCTTCATCGAGTACGCAGAACTCGTTGACGATAATCCGTCTCTAGCGCGTCAAGTTTTC 242
||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 121 CTCTTCATCGAGTACGCAGAACTCGTTGATGATAATCCGTCTCTAGCGCATCTTGTTTTC 180
Query 243 TCAGATCCCGAACACTATCTTCGGCAATTCGACGATTCAGCCATTCTAGCTCACAAAATT 302
||| |||||||||| | |||||| |||||| |||||||||||||| |||| |||||||||
Sbjct 181 TCAAATCCCGAACAGTTTCTTCGTCAATTCAACGATTCAGCCATTTTAGCACACAAAATT 240
Query 303 GCTTTGGAGCATATGAAGAAATTTGAGGAGAAGATTGGAATTGAGAAGAGATTTATACAT 362
|| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 241 GCGTTGGAGCATATGAAGAAATTTGAGAAGAAGATTGGGATTGAGAAGAGATTTATACAT 300
Query 363 GTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGAGACATTCCCGAGTATT 422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGAGACTTTCCCGAGTATT 360
Query 423 GGCCGGGTTAGAGTAAAGCACCGCGGGATTCTGATGATGTTGAAAGGCACGGTGATTCGA 482
|||||||||||||||| |||||| ||||||||| ||||||||||||| ||||| ||||||
Sbjct 361 GGCCGGGTTAGAGTAAGGCACCGAGGGATTCTGTTGATGTTGAAAGGTACGGTTATTCGA 420
Query 483 TCCGGGGCTGTGAAAATGTATGAGGGAGAAAAGATGTATCGATGTCGAAAATGCAAGCAC 542
|| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 421 TCGGGGGCTGTTAAAATGTATGAGGGAGAAAGGATGTATCGATGCCGAAAATGCAAGCAC 480
Query 543 ATGTTTCCTATTTTCCCTGAGTTAGAATCAATCAACTCTATTGTGAAACCGCCTTTTTGT 602
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGTTTCCTATTTTCCCTGAGTTGGAATCAATCAACTCTATTGTGAAACCGCCTTTTTGT 540
Query 603 CCTTCTCAGCGGTCAAAAGCTTGTGAGGGCACAAACTTTGATCCTGTAGATGATACAGTA 662
|||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 541 CCTTCTCAGCGGTCAAAATCTTGTGAAGGCACAAACTTTGATCCTGTTGATGATACAGTA 600
Query 663 ACACGCCATGATTATCAAGAAATCAAAATCCAAGAAAATACTCAGGTTTTAGGTGTTGGT 722
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACACGCCACGATTATCAAGAAATCAAAATCCAAGAAAATACTCAGGTTTTAGGTGTTGGT 660
Query 723 GTTATCCCAAGGTCCATTCTAGTCGTCCTGAAAGATGACCTTGTTGACAATGTTAAAGCT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTATCCCAAGGTCCATTCTAGTCGTCCTGAAAGATGACCTTGTTGACAATGTTAAAGCT 720
Query 783 GGAGATGATGTTGTTGTCTCTGGAATCTTGACTTCAAAATGGTCTCATGACTTGAAAGAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGAGATGATGTTGTTGTCTCTGGAATCTTGACTTCAAAATGGTCTCATGACTTGAAAGAT 780
Query 843 GTTCGTTGCGACCTTGAACCTATGTTGATTGCCAATCATGTCAGAAGAACTAATGAGCTG 902
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTCGCTGTGACCTTGAACCTATGTTGATTGCCAATCATGTCAGAAGAACTAATGAGCTC 840
Query 903 AAATCAGAAATCGATATATCTGATGATTTGATCGAGAAGTTCAAGAACTTTTGGAGCCAC 962
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAATCAGAAATCAATATATCTGATGATTTGATCGAGAAGTTCAAGAACTTTTGGAGCCAC 900
Query 963 TTCAGAGATACCCCTTTGAAAGGGAGAAATGCTATCTTACGAGGTATCTGCCCCCAAGTC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCAGAGATACCCCTTTGAAAGGGAGAAATGCTATCTTACGAGGTATCTGCCCCCAAGTC 960
Query 1023 TTTGGACTCTTCACTGTTAAACTTGCAGTTGCTTTGACACTTATTGGAGGTGTGCAACAT 1082
|| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 961 TTCGGACTCTTCACTGTTAAGCTTGCAGTTGCCTTGACACTCATTGGAGGTGTGCAACAT 1020
Query 1083 GTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTTCTTATTGGTGATCCA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTTCTTATTGGTGATCCA 1080
Query 1143 GGCACTGGAAAATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAGAGCTGTAATC 1202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 GGCACTGGAAAATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAGAGCTGTTATC 1140
Query 1203 ACAACGGGACTAGGAAGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGATGGAGGA 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 ACAACGGGACTAGGAAGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGATGGAG-A 1199
Query 1263 GAGTGGATGTTGGAAGCTGGGGCTCTTGTTCTTGCAGATGGTGGACTTTGCTGCATTGAT 1322
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1200 G--TGGATGTTGGAAGCTGGGGCCCTTGTTCTTGCAGATGGTGGACTTTGCTGTATTGAT 1257
Query 1323 GAATTTGATAGCATGAGAGAGCATGACCGAGCAACCATACATGAAGCAATGGAGCAACAA 1382
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1258 GAATTTGATAGCATGAGAGAGCATGACAGAGCAACCATACATGAAGCAATGGAGCAACAA 1317
Query 1383 AGTATAAGCGTTGCCAAGGCTGGCCTAGTAACAACTCTTAGCACAAAGACAATCGTCTTC 1442
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 AGTATAAGTGTTGCCAAGGCTGGCCTTGTAACAACTCTTAGCACAAAGACAATCGTCTTC 1377
Query 1443 GGTGCAACCAATCCTAAAGGACAATATGATCCCGATCAGTCTCTTTCTGTCAATACTGCA 1502
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1378 GGTGCAACAAATCCTAAAGGACAATATGAGCCCGATCAATCTCTTTCTGTCAATACTGCA 1437
Query 1503 CTTTCCGGTCCCTTGTTGAGCAGGTTTGACATTGTACTTGTTCTCTTAGATACAAAAAAT 1562
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTTTCCGGTCCATTATTGAGCAGGTTTGACATTGTACTTGTTCTCTTAGATACAAAAAAT 1497
Query 1563 CCTGAATGGGATGCAGTTGTATCTTCTCACATCCTTGCCGAGGTGCAAATAGAGCAAGAC 1622
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1498 CCCGAATGGGATGCAGTTGTATCCTCTCACATCCTTGCCGAGGTGCAAATAGAGCAAGGC 1557
Query 1623 AGAGAGGTCGATGATCTGACAACTATTTGGCCACTACCGATGCTTCAAAGATACATTCAG 1682
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGAGATGTCGATGATCTGACAACTATTTGGCCACTACCGATGCTTCAAAGATACATTCAG 1617
Query 1683 TTTGTGaaaaaaaaCTTCAGACCTGTCCTATCAAAGGAAGCAGAAGAAATAATTTCAAGT 1742
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1618 TTTGTGAAAAGAAACTTCAGGCCTGTCCTATCAAAGGAAGCAGAAGAAATTATTTCAAGT 1677
Query 1743 TATTATCGACTCCAAAGAAGATCTTCAACTCATAATGCAGCAAGAACAACCGTGCGGATG 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TATTATCGACTCCAAAGAAGATCTTCAACTCATAATGCAGCAAGAACAACCGTGCGGATG 1737
Query 1803 TTGGAAAGCTTAATCCGTTTGGCTCAAGCTCATGCAAGGCTTATGTTCAGAAATGAGGTC 1862
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTGGAAAGCTTGATACGTTTGGCTCAAGCTCATGCAAGGCTTATGTTCAGAAATGAGGTC 1797
Query 1863 ACGCGATTAGATGCCATAACAGCTATCTTGTGCATTGAATCATCGATGACTATTTCAGCC 1922
|||||||| |||||||||||||| ||| | |||||||||||||||||||| |||||||||
Sbjct 1798 ACGCGATTGGATGCCATAACAGCAATCCTATGCATTGAATCATCGATGACCATTTCAGCC 1857
Query 1923 ATAGTAGACAGTATGGGGAATGCGCTACACTCAAATTTCTCCGAAGAACCAGATCAGGAA 1982
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1858 ATTGTAGACAGTATGGGGAATGCGCTTCACTCAAATTTCTCCGAAGAACCAGATCAGGAA 1917
Query 1983 TGTATCCTTTTTCGGCATTA 2002
||||||||||||||||||||
Sbjct 1918 TGTATCCTTTTTCGGCATTA 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5