BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14060.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480329 jgi|Araly1|480329|fgenesh2_kg.3__3030__AT2G14060.1 1327 0.0
> Ahg480329 jgi|Araly1|480329|fgenesh2_kg.3__3030__AT2G14060.1
Length=970
Score = 1327 bits (718), Expect = 0.0
Identities = 906/993 (91%), Gaps = 27/993 (3%)
Strand=Plus/Plus
Query 1 ATGAAAGGAGGAACAGGAGACCATAGTTATGCTACTAATTCACATTATCAGAGAAGTGTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGGAGGAACAGGAGACCATAGTTACGCTACTAATTCACATTATCAGAGAAGTGTT 60
Query 61 TTCTATGAGATACAACCTTTGGTCATAGAGAA-CGTAAGAGAAATGCTACTGAAAAATGG 119
|||| ||||||||||||| |||||||||| || |||||||||||||||| |||| ||
Sbjct 61 TTCTTTGAGATACAACCTATGGTCATAGA-AAGCGTAAGAGAAATGCTAGTGAATGTTGA 119
Query 120 GTTTCCTGGTTGCATCAAAGTGGCAGACTTGGGTTGTTCTACTGGACAAAACACGGTGTT 179
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTTCCTGGTTGCATCAAAGTGGTAGACTTGGGTTGTTCTACTGGACAAAACACGGTGTT 179
Query 180 GGCCATGTCCGCAATCGCCTACACGATCATGGAGTCATACCAACAAATGAGTAAAAACCC 239
|||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 180 GGCCATGTCCGCGATCGCCTACACGATCTTAGAGTCGTACCAACAAATGAGTAAGAACCC 239
Query 240 ACCAGAAATCGATTGTTATTTGAACGACCTTCCAGAGAACGATTTCAATACCACCTTCAA 299
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 ACCAGAAATCGACTGTTATTTGAACGATCTTCCAGAGAACGATTTCAATACCACCTTCAA 299
Query 300 GTTGTTTCATTCTTTCCAAGAGAAGCTGAAACCGGAGGTTAAAGGAAAGTGGTTTGTCTC 359
|||| ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 300 GTTGATTCCTTCTTTCCAAGAGAAGCTGAAAAGGGAGGCTAAAGGAAAGTGCTTTGTCTC 359
Query 360 GGGAGTCCCGGGTTCTTTTTACTCAAGGCTATTCCCAAGAAAGTCTCTCCATTTTGTTCA 419
||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 360 GGGAGTCCCCGGTTCTTTTTACAGAAGGCTATTACCAAGAAAGTCTCTCCATTTTGTTCA 419
Query 420 TTCAGCTTTTAGTATCCATTGGCTTTCTAGAATTCCAGATGGCCTTGAGAGCAACACTAA 479
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 420 TTCAGCTTTTAGTATCCATTGGCTTTCTAAAATTCCAAATGGCCTTGAGTGCAACACTAA 479
Query 480 AAGCATTCATATTAAATATCCATACCCTTCAAATGTCTACAAGAGTTATTTAAATCAGTT 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 AAGCATTCATATTAAATATCCATACCCTCCAAATGTCTACAAGAGTTATTTAAATCAGTT 539
Query 540 CAAGA-TAGATTTTTCGTTGTT-CTTAAAAATGCGTTCAGAAGA-AGTAGTGCATAATGG 596
||||| | |||||||| | ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 540 CAAGAAT-GATTTTTCAT-GTTTCTTAAAAATGCGTTCAGAAGAGAC-AGTGCATAATGG 596
Query 597 ACATATGGTTCTAACGTTCGTGGGAAGAAAGGTTTCCGACACTTTATCCAAAGATTGTTT 656
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 597 ACATATGGTTCTAACGTTCGTGGGAAGAAAGGTTTCGGACACTTTATCGAAAGACTGTTT 656
Query 657 CCAAGTTTGGTCGTTGTTATCCGATTGCCTCCTCGATCTAGCCTCCGAGGGGTTTGTGAA 716
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 657 CCAAGTTTGGTCATTGTTATCTGATTGCCTCCTCGATCTAGCCTCAGAGGGGTTTGTGAA 716
Query 717 CGATTCAATGGTAAAATCATTTAACATGCCATTCTACAATCCAAACGAAGAAGAGGTAAG 776
| ||| || | |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 717 TAAATCAGTGATGGAATCGTTTAACATGCCATTCTACAATCCAAATGAAGAAGAGGTGAG 776
Query 777 AGAATTTATCTTAAAGGAAGGTTCCTTCGAGATCACCAAGATCGAGAAATTCGACCATGT 836
||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 777 GGAAGTTATCTTAAAGGAAGGTTCCTTCGATATCAACAAGATCGAGAAATTTGACCATGT 836
Query 837 TGTCCCATACAAAATTGACCGTGAGGAAGAAGATGAGGAGCAATCACTTCAGTTGGAAGC 896
|||||| || ||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 837 TGTCCCGTATAAAATTGACCGTGAGGAAGAAGATGAGGACCAATCACTTC-G--G----- 888
Query 897 TGGTATAAAGCATGCAAGCTGGGCAAGATGCATCACCGAACCATTGCTCGTTGCTCATTT 956
| | | | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 889 T--T-----G---G-AAGCTGGGCAAGATGCATCACCGAACCATTGCTCGTTGCTTATTT 937
Query 957 CGGAGATGCAATTATAGAACCGGTGTTCAACAA 989
|||||||||||||| |||||||||||||||||
Sbjct 938 TGGAGATGCAATTATCGAACCGGTGTTCAACAA 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5