BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14070.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480330 jgi|Araly1|480330|fgenesh2_kg.3__3031__AT2G14070.1         436    6e-122
  Ahg906135 jgi|Araly1|906135|Al_scaffold_0003_3263                    241    5e-63 


> Ahg480330 jgi|Araly1|480330|fgenesh2_kg.3__3031__AT2G14070.1
Length=570

 Score =  436 bits (236),  Expect = 6e-122
 Identities = 265/279 (95%), Gaps = 2/279 (1%)
 Strand=Plus/Plus

Query  314  GTGCTGCTGCAAGC-ACAAGACACACCTCGTGGATGGTGGCTACGGCCATCGCTGCCGTG  372
            |||||||||||| | |||||||||||||||||||| |||||| ||||||| || ||||||
Sbjct  293  GTGCTGCTGCAA-CTACAAGACACACCTCGTGGATAGTGGCTTCGGCCATAGCCGCCGTG  351

Query  373  GAAACTCGTTGGAACTATCCTCTCCGTTTTTTCAACAAAGATGTGAGGGCTCGTCTTCGT  432
            ||| |||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||
Sbjct  352  GAAGCTCGTTGGAACTATCCCCTCCGTTTTTTCAACAAAGATGTCAAAGCTCGTCTTCGT  411

Query  433  GCCATCGCTGTCACTTCTCGTCCACCTTCCTCCGcttcttcttcttcttcttcttcGGCT  492
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  GCCATCGCTGTCACTTCCCGTCCACCTTCCTCCGCTTCTTCTTCTTCTTCTTCTTCGGCT  471

Query  493  GATTTAGTCAAGGAGAATCATCCTATGCCTAAATCTGAAGCTTCCATGGAAAGAGTTATG  552
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  GATTTAGTCAAGGACAATCATCCTATGCCTAAATCTGAAGCTTCCATGGAAAGAGTTATG  531

Query  553  TGTCTTAGCTGCTTTGGCCCAACCACTGTTCGATTCTAG  591
             ||||||||||||||||||||||||||||||||||||||
Sbjct  532  GGTCTTAGCTGCTTTGGCCCAACCACTGTTCGATTCTAG  570


> Ahg906135 jgi|Araly1|906135|Al_scaffold_0003_3263
Length=792

 Score =  241 bits (130),  Expect = 5e-63
 Identities = 153/164 (93%), Gaps = 2/164 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAAAGCAGATAGAGCAGGTCAAACAATTTCTAGAGACAATGCCGAATCTTGAACAA  60
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  571  ATGAAAAAGCAGATAGAGCAGGTCAAGCACTTTCTAGAGACAATGCCGAATCTTGAACAA  630

Query  61   ATGATATTATACTACGATACACCATACGATGACGATGTGCTTGACGTTTCCATGCAACTT  120
            ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||
Sbjct  631  ATGATATTATACTACGATACACCATCCGATGACGATGTACTTGAAGTTTCCAAGCAACTT  690

Query  121  CAAATGCTT-CATAGAGTGGCTTCAGCTAAATGCAAGATCCAAG  163
            || |||||| | |||||| ||||| |||||||||||||||||||
Sbjct  691  CAGATGCTTAC-TAGAGTAGCTTCGGCTAAATGCAAGATCCAAG  733



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5