BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14090.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906135 jgi|Araly1|906135|Al_scaffold_0003_3263 449 2e-125
Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847 111 1e-23
Ahg480330 jgi|Araly1|480330|fgenesh2_kg.3__3031__AT2G14070.1 104 2e-21
> Ahg906135 jgi|Araly1|906135|Al_scaffold_0003_3263
Length=792
Score = 449 bits (243), Expect = 2e-125
Identities = 286/307 (93%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 577 GAACCGCTCTGTGTCTTCCAAAACCTTTAAGAGATTGAAGCTATGTTGTATAGACTATGA 636
||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 216 GAACCGCTCTGTGTCTTCCAAAACCCTTAAGAGATTGAAGCTATCTTGTATAGAATATGA 275
Query 637 TCAGAATCCGGATACTGTTTCATTTGATACACCAAATCTAGTTTACTTGGAATACTCTGA 696
||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 276 TCAGATTCCGGATACTGTTTCATTTGATACACCAAATCTTGTCTCCTTGGAATACTCTGA 335
Query 697 TTACGTTGCGGTCAAGTACCCGAGAGTGAAGTTTTGTTCGCTTGTTGAAGCTAGTCTCAA 756
||| ||||||| |||||||||||||||||| |||||||||||| |||||||| ||||||
Sbjct 336 TTATGTTGCGGACAAGTACCCGAGAGTGAATTTTTGTTCGCTTTTTGAAGCTTTTCTCAA 395
Query 757 TCTTCAAATGACGTATGATCAGTGTGCACAAGCAAGCTATGGATTTTTGGTTGGTAATGC 816
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 396 TCTTCATATGACATATGATCAGTGTGCACAAGCAAGCTATGGAGATTTGGTTGGTAATG- 454
Query 817 T-ACAGATTTTCTTATGGGAGTAAGCAATGTTCAGATCCTTCACTTATCTGATAAGTCTC 875
| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 455 TAACAGATTTTCTTATGGGAGTAAGCAATGTTCAGATCCTTCACTTATCTGACAGGTCTC 514
Query 876 TTGAGGT 882
|||||||
Sbjct 515 TTGAGGT 521
Score = 257 bits (139), Expect = 1e-67
Identities = 192/217 (88%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 1294 AGGTCGTAAAGGTATTGAAGTTTGGTG-AAACtttttttAAC--T-ACGATGATATGAAA 1349
||||||||||||||| ||||||||||| ||| || || || | || | |||||||||
Sbjct 518 AGGTCGTAAAGGTATGGAAGTTTGGTGAAAAAAATTATT-ACTATAACAAGGATATGAAA 576
Query 1350 AAACAGTTAGAGCAGGACAAACATTTTCTAGAGACAATGCCGAATCTTGAACAAATGATA 1409
|| ||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 577 AAGCAGATAGAGCAGGTCAAGCACTTTCTAGAGACAATGCCGAATCTTGAACAAATGATA 636
Query 1410 TTATACTACAATACACCATACGATAACGATGTGCTTGAAGTTTCCAAGCAACTTCAGATA 1469
||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 637 TTATACTACGATACACCATCCGATGACGATGTACTTGAAGTTTCCAAGCAACTTCAGATG 696
Query 1470 CTTCCTAGAGTAGCTTCAACTAAATGCAAGATCCAAG 1506
||| ||||||||||||| ||||||||||||||||||
Sbjct 697 CTTACTAGAGTAGCTTCGGCTAAATGCAAGATCCAAG 733
Score = 174 bits (94), Expect = 2e-42
Identities = 125/139 (90%), Gaps = 6/139 (4%)
Strand=Plus/Plus
Query 58 CACATATTATCATTCCTTCCTCTAAAAGATTCTGCTTTGACTTCACTTCTCTCGAAAAAG 117
||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||
Sbjct 23 CACATATTATCATTCCTTCCTATAAACGATTCTGCTTTGACTTCAGTCCTCTCGAAAAAG 82
Query 118 TGGCGTTATCTCTTTGCTTTCAGACCAAATCTTGATTTTGATGGCTTAGTTAATC-TA-- 174
||||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||
Sbjct 83 TGGCGTTATCTCTTTGCTTTCAGACCAAAACTTG-TTTTGATGGCTCGGTTAATAATATG 141
Query 175 CATCATCGTGAAGAT-AGT 192
||| ||||||||||| |||
Sbjct 142 CAT-ATCGTGAAGATGAGT 159
> Ahg898881 jgi|Araly1|898881|Al_scaffold_0005_2847
Length=1437
Score = 111 bits (60), Expect = 1e-23
Identities = 256/345 (74%), Gaps = 36/345 (10%)
Strand=Plus/Plus
Query 424 CCATTGATGTGG-AAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTATT 482
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 470 CCATTGAT-AGGAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTGTT 528
Query 483 -AG-TATAGGAAAAGC-TGGTGATTACTTT-G-ACAAGATTCTATCTGGTTGTCTTGT-C 536
|| | | || ||| |||| || ||| | | ||| |||| ||||| |||| || |
Sbjct 529 GAGGT-TC--AAGAGCGTGGTT-TTGGTTTTGTA-AAGCTTCTCTCTGGCTGTCCCGTGC 583
Query 537 TTAGAGGAATTGGTTCTGAT-AATGTCTACTTTGATTTTAC-G-AACC---GCTCTGTGT 590
| ||||| || |||||||| ||| || | || || | || |||||||||
Sbjct 584 TC-GAGGAGTTAGTTCTGATGAATATCGGGTGGGAAA--ACTGGAAGTTTTGCTCTGTGT 640
Query 591 CT-TCCAAAACCTTTAAGAGATTGAAGCTATGT-TGT-ATAGACTA-TGATCAGAATCCG 646
|| | |||||| | ||||| ||| | | | | ||| | |||| | | || |||||||
Sbjct 641 CTGTT-AAAACCCTCAAGAGGCTGACGTTTT-TCTGTGA-AGAC-AGTTATGAGAATCCA 696
Query 647 GATA-CTGTTTCATTTGATACACCAAATCTAGTTTACTTGGAATACTCTGAT--TACGTT 703
| | | || ||||||||||| ||||| || |||||| | ||||| |||||| || ||
Sbjct 697 AAGAGC-GTGTCATTTGATACTCCAAACCTTGTTTACCTAGAATATTCTGATGCTA--TT 753
Query 704 GCGGTCAAGTACCCGAGAGTGAAGTTTTGTTCGCTTGTTGAAGCT 748
|||| |||||| || | |||||| ||| |||||| |||||||||
Sbjct 754 GCGGGCAAGTATCCAAAAGTGAACTTTAATTCGCTCGTTGAAGCT 798
> Ahg480330 jgi|Araly1|480330|fgenesh2_kg.3__3031__AT2G14070.1
Length=570
Score = 104 bits (56), Expect = 2e-21
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1493 ATGCAAGATCCAAGTAATTTCTGACAACCTCAGCTTATCTTTTTCCTTTTCCACAA 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 ATGCAAGATCCAAGTAATTTCTGACAACCTCAGCTTATCTTTTTCCTTTTCCACAA 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5