BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14095.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931135 jgi|Araly1|931135|scaffold_303592.1 1166 0.0
> Ahg931135 jgi|Araly1|931135|scaffold_303592.1
Length=746
Score = 1166 bits (631), Expect = 0.0
Identities = 712/751 (95%), Gaps = 5/751 (1%)
Strand=Plus/Plus
Query 19 TTGATTTCATAAAACGGATTGATGATGTATCTAAGTCGGAGAATGCAGAGCGGAGGTTTT 78
||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 TTGATTTCATAAACCGGATTGAAAATGTATCTAAGTCGGAGAATACAGAGCGGAGGTTTT 60
Query 79 GCGGTGTATCGACAGGGCCTTGCGGAAGTCTTACAAATATATAACAAAGTTGAGAGGAAA 138
||||| ||| | ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 61 GCGGTCTATAGGCAGGGCCTTGCAGAGGTCTTACAAATATACAACAAAGTTGAGAGGAAG 120
Query 139 ACATCTATGAATCCATGTCCGGCGATTATTCGATTTGGAAGAGACTATCATAACCAAATA 198
||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ACAACTTTGAATCCATATCCGGCGATTGTTCGATTTGGAAGAGACTATCATAACCAAATG 180
Query 199 TGTCCACAAGGTCTCAAGTTATCAAATCCGCTTAATGCCGGGAGATACTTTAGTAATGTT 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TGTCCACAAGGTCTCAAGTTATCAAATCCGCTTAATGCCGGGAGATACTTTAGTAATGGT 240
Query 259 TCCAATGACTCCAAGATGCAACCTTCTCCTCCAAACCAGTGGTTTAATTTTCCCTCTTGG 318
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TCCAACAACTCCAATATGCAACCTTCTCCTCCAAACCAGTGGTTTAATTTT---TCTTGG 297
Query 319 GGAAGATGGGTTATAGGTTCTGCGATATCCTTAGTGTTATCTTTCTGGAACAACGAAAGG 378
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGAAGATGGGTTATTGGTTCTGCGATATCCTTAGTGTTATCTTTCTGGAACAACGAAAGG 357
Query 379 TTACAAAAACTGAAACGAATAGAAGGAGAGGCGGAGTTGGTTGTGGAAGGGGTAGAGGCT 438
|||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 358 ATACAAAAACTGAAACGGATCGAAGGAGAGGCAGAGTTGGTAGTGGAAGGGGTAGAGGCT 417
Query 439 GTAGCAGAAATGGTGGAGAAAGTAGCGACGGCGACTGACGAAATGGCTGAAGAAATGGCA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTAGCAGAAATGGTGGAGAAAGTAGCGACGGCGACTGACGAAATGGCTGAAGAAATGGCA 477
Query 499 GAGAAACTGCCTGAGAAAAATAAACTAAAACAAGTGGCTTTGGTTCTAGAACACATTTCA 558
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 GAGAAACTGCCTGAGAAAAATAAACTAAAACAAGTGGCTTTGGTTCTAGAACATATTTCA 537
Query 559 GAGGTTGCTGCCCATGAAGCACATCTAACCCAAGATTTCCTTCACAAGGTGGAAAAAGTC 618
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 538 GAGGTCGCTGCCCATGAAGCACATTTAACCCAAGAGTTCCTTCACAAGGTGGAAAAAGTC 597
Query 619 ACACAAGATATAGATGACTTGGAGGCAATGATAAAGCCTTTGATAGACAAAAAAGTGGCA 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ACACAAGATATAGATGACTTGGAGGCAATGATAAAGCCTTTGATAGACAAAAAAGTGGCA 657
Query 679 AATGCTGAAACAAAGCAACAAACTAAAGAAGAAGAAGCAAACCATGAGTCGCCTTCACGC 738
||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||
Sbjct 658 AATGCTGAAACTAAGCATCAAAGTAAAGAAGAAGAAGCAAACCCTGAGTCGCCTTCACGC 717
Query 739 CACTAATCTCTTCATATATCTCATCTAATTT 769
|||||||||||||||||||| |||||||||
Sbjct 718 CACTAATCTCTTCATATATC--ATCTAATTT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5