BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14110.1
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480332 jgi|Araly1|480332|fgenesh2_kg.3__3033__AT2G14110.1 1042 0.0
> Ahg480332 jgi|Araly1|480332|fgenesh2_kg.3__3033__AT2G14110.1
Length=739
Score = 1042 bits (564), Expect = 0.0
Identities = 644/682 (94%), Gaps = 8/682 (1%)
Strand=Plus/Plus
Query 26 CCATTAACGTCTGGATTTCGATTGTCAAGAAGTTTTGTAAAACGCAAACTCCGATAATCT 85
|||||||||||| || ||||| |||| |||| ||||||||||||| |||||||| |||||
Sbjct 1 CCATTAACGTCTCGA-TTCGACTGTC-AGAATTTTTGTAAAACGCGAACTCCGACAATCT 58
Query 86 TTCTCTAATCTCCGATCGTGTTTTCTTAGTGAGATGGCGGAAGAGAAGGTAAAAGATGAA 145
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 59 TTCTCTAATCTCCGATCGTGTTTTCTTAGTGAGATGTCGGAAGAGATGGTAAAAGATGAA 118
Query 146 GCTATGCAAATAATGGGAATGTTTCAAATTCTTCCGAGACTTGTCGTCTTTGATCTCGAT 205
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GCGATGCAAATAATGGGAATGTTTCAAATTCTTCCGAGACTTGTCGTCTTTGATCTCGAT 178
Query 206 TATACTCTCTGGCCTTTCTACTGTGAGTGCCGTTCGAAACGAGAAATGCCATCTATGTAT 265
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 179 TATACTCTCTGGCCTTTTTACTGTGAATGCCGTTCGAAACGAGAAATGCCGTCTATGTAT 238
Query 266 CCACAAGCAAAGGGTATATTGAGTGCTTTGAAAGAGAAGGGTATCGAAATGGCTATTGCT 325
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 239 CCACAAGCAAAGGGTATATTGAGTGCTCTGAAAGAGAAGGGTATTGAAATGGCTATTGCT 298
Query 326 TCGAGATCTCCTACTTCAGATATTGCTAACACATTTCTTGATAAATTGAACATTAAGCCC 385
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 TCGAGATCTCCTACTTCGGATATTGCTAACACATTTCTTGATAAATTGAACATCAAGCCT 358
Query 386 ATGTTTGTGGCCAAGGAAATATACTCAAGTTGGAGTCATAAGACGGAACATTTTCAGAAG 445
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 ATGTTTGTCGCCAAGGAAATATACTCAAGTTGGAGTCACAAGACGGAACATTTTCAGAAG 418
Query 446 ATACACACAAGAACGGGAGTGCCGTTTACCGCGATGCTCTTCTTCGATGATGAAGACCGA 505
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| ||
Sbjct 419 ATACACACGAGAACGGGAGTGCCTTTTACTGCGATGCTCTTCTTCGATGATGAGGACAGA 478
Query 506 AACATTAAATCAGTTTCGAAAATGGGAGTGACAAGCATCCTTGTTGGTGATGGGGTTACG 565
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 479 AACATTAAATCAGTTTCGAAAATGGGAGTGACAAGCATCCTTGTGGGTGATGGCGTTACG 538
Query 566 CTTGGAGCATTTAGACAAGGGCTTACTGAATTTACTCAAAATCATAATAGTATCGAGAAG 625
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 539 CTTGGAGCATTTAGACAAGGGCTTACTGAATTTACTCAAAATCATAACAGTATCGAGAAG 598
Query 626 AATAAACAGGTTTGGCGTGACAAGTATTCTGGAAAGCCTACATCATCGGAG----ACA-G 680
||||||||||||||||| ||||||||||| ||||||||||||||||||||| | | |
Sbjct 599 AATAAACAGGTTTGGCGCGACAAGTATTCCGGAAAGCCTACATCATCGGAGTTGGAGACG 658
Query 681 -ACAAAGATTAACATTCATTTG 701
||||||||| |||||||||||
Sbjct 659 GACAAAGATTGACATTCATTTG 680
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 812 ATTAATCTAGACTAAAAACATGCTCTTCTCGA 843
||||||||||||||||||||||||||||||||
Sbjct 708 ATTAATCTAGACTAAAAACATGCTCTTCTCGA 739
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 722 TGGACACAAAACATTCTCGAGTGTTGTAT 750
|||||||||||||||||||||||||||||
Sbjct 679 TGGACACAAAACATTCTCGAGTGTTGTAT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31222669023
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5