BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14120.3
Length=2836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480333 jgi|Araly1|480333|fgenesh2_kg.3__3034__AT2G14120.2 2143 0.0
Ahg491315 jgi|Araly1|491315|fgenesh2_kg.7__748__AT4G33650.1 1016 0.0
> Ahg480333 jgi|Araly1|480333|fgenesh2_kg.3__3034__AT2G14120.2
Length=2735
Score = 2143 bits (1160), Expect = 0.0
Identities = 1371/1472 (93%), Gaps = 18/1472 (1%)
Strand=Plus/Plus
Query 1365 GGAAGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGC 1424
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GGAGGTTGATCCATGCGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGC 1338
Query 1425 AACTGGTCCCAGATCTGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTCAGGAG 1484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AACTGGTCCCAGATCTGCAATATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTCAGGAG 1398
Query 1485 GCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCT 1544
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1399 GCAAATATCTCGTTTACTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTTGATGAGCT 1458
Query 1545 AGTAAAGATTAGTCATCAGTGTATGATGAAAGAGTTACAGCGGTTTCCAGTCCTGCAAAA 1604
||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 1459 AGTAAAGATTAGTCATCAGTGTATGATGACAGAGTTACAGCGCTTCCCAGTCCTGCAAAA 1518
Query 1605 GCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAAT 1664
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1519 GCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCACAGGCAAT 1578
Query 1665 GATCCGAGATCTTATTGAAATGGAGATGGATTATATAAACACCTCACACCCAAATTTTAT 1724
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1579 GATCCGAGATCTTATTGAAATGGAGATGGATTACATAAACACCTCACACCCAAATTTTAT 1638
Query 1725 CGGGGGAACTAAAGCCGTGGAGCAAGCAATGCAAAC-AGTCAAATCTTCTAGGATTCCGC 1783
||||||||| ||||||||||||| ||||||| ||| ||| |||||||| ||||||||||
Sbjct 1639 CGGGGGAACCAAAGCCGTGGAGCTTGCAATGC-AACTAGTTAAATCTTCAAGGATTCCGC 1697
Query 1784 ATCCTGTTGCGCGGCCAAGGGATACTGTGGAGCCTGAGAGGACGGCTTCTTCCGGGAGTC 1843
||||||||||||||||||| || ||||||||||||| || ||| |||||| | |||||
Sbjct 1698 ATCCTGTTGCGCGGCCAAGTGACACTGTGGAGCCTGCGAAGACAACTTCTTTTGCGAGTC 1757
Query 1844 AAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGGAATCATCACTGATCAGGCAG 1903
|||||||||||||||||||||||||||||||||||||||| | ||| || ||
Sbjct 1758 AAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGG-------A---ATC-GG-AG 1805
Query 1904 TTCCAACTGCAGCAGATGCTGAAAGACCTGCACCAGCTGGAAGCACAAGCTGGAGTGGTT 1963
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||
Sbjct 1806 TTCCAACTGCAGCAGATGCTGAAAGATCTGCACCAGCTGGAAACTCAAGATGGAGTGGTT 1865
Query 1964 TCTCATCAATTTTTCGGGGGAGTGATGGTCAGGCAGCTGCTAAAAACAACCTATTAAACA 2023
||||||||||||| ||||||| ||||||||||||||||||| |||| | |||| ||||||
Sbjct 1866 TCTCATCAATTTTCCGGGGGAATGATGGTCAGGCAGCTGCTGAAAATAGCCTACTAAACA 1925
Query 2024 AACCATTCAGCGAAACTACTCAAGAAGTGTATCAGAACTTGTCAACAATCTATTTAAAGG 2083
|||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1926 AACCGTTCAGCGAAGCTGCTCAAGATGTGTATCAGAACTTGTCAACAATCTATTTAAAGG 1985
Query 2084 AGCCTCCAACTATTTTGAAG-TCATCTGAAACTCATTCAGAACAGGAGTCAGTTGAGATT 2142
|||||||||| |||||| || ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1986 AGCCTCCAACCATTTTG-AGATCATCGGAAACTCATTCAGAACAGGAGGCAGTTGAGATT 2044
Query 2143 GAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGAAGAATGTCGAGGAC 2202
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2045 CAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGAAGAATGTTGAGGAC 2104
Query 2203 TTGGTCCCAAAAGCAATCATGCATTTTCTGGTAAATTACACGAAACGTGAGCTGCACAAT 2262
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 TTGGTCCCAAAAACAATCATGCATTTTCTGGTAAATTACACGAAACGTGAGCTGCACAAT 2164
Query 2263 GTTTTCATCGAGAAGCTTTACAGGGAGAACTTAATTGAAGAACTGTTGAAAGAGCCCGAT 2322
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 2165 GTTTTCATCGAGAAGCTTTACAGGGAGAACTTGATTGAAGAACTGCTGAAAGAGCCAGAT 2224
Query 2323 GAGTTAGCGATAAAGAGGAAACGCACGCAAGAGACTCTTCGCATTCTTCAGCAGGCTAAT 2382
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2225 GAGTTAGCGATAAAGAGGAAACGCACGCTGGAGACTCTTCGCATTCTTCAGCAGGCTAAT 2284
Query 2383 CGGACGTTAGACGAGCTGCCGTTAGAAGCTGAATCGGTCGAGAGAGGTTACAAAATTGGT 2442
||||| |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||
Sbjct 2285 CGGACATTAGACGAGCTGCCCTTGGAAGCAGAATCAGTCGAGAGAGGTTACAGAATTGGT 2344
Query 2443 TCAGAAGCGAAACATGAGGAGTTACCGGGCACAAGAAGATCAAGGACAGAAACTAATGGG 2502
|||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2345 TCAGAATCGAAACATGAGGAGTTACCGGGTACAAGAAGATCAAGAACAGAAACTAATGGG 2404
Query 2503 AACGGACGGCTTCATATGTAAATTCAAATTGTGATTGCACGCATGACTCATTCATTTGGT 2562
||||||||| |||| ||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 2405 AACGGACGGTTTCACATGTAAATTCAAATTGTGATTGCACGCATAATTCATCCATTTGGT 2464
Query 2563 GATGGAAAAGATTTGTTTTCTTCCCTTTAAATCGGTTGTGCGTGGGGAAAGAAAGGTGTT 2622
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2465 GATGGAAAAGATTTGTTTCCTTCCCTTTAAATCGGTTGTGCGTGGGGAAAGAAAGGTGTT 2524
Query 2623 CTTAGGTATAGTGAAACGTGATGATAAACAGAGGTTTTGTTGTGAGGGTATTATCAACCT 2682
||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 2525 CTTAGGTATAGTGAAACATGATGAGAAACAG-GGTTTTGTTGTGAGGGTATCATCAACCT 2583
Query 2683 ACTGGAAAATGTGACTTAATATTTGTTTCTCAAAACCGAGAAGAATAATCAA-TTCCTAA 2741
| | || ||||||||||| |||||||||||| | |||||||||||| |||| |||||||
Sbjct 2584 ATTAGATAATGTGACTTATTATTTGTTTCTCGGAGCCGAGAAGAATATTCAAATTCCTAA 2643
Query 2742 TTTTACTTTTCATAGCTTTATTTGTTACGAAAAACAAGAACGTACATGAGACAATGTAAT 2801
||||||||||||| ||||||||||||| |||||| ||||||||| |||| |||||||||
Sbjct 2644 TTTTACTTTTCATTGCTTTATTTGTTAAGAAAAAAAAGAACGTATTTGAGCCAATGTAAT 2703
Query 2802 GATAAATTTATCACTGGTAAGTTGATCTTGTT 2833
|||||||||||||||| | |||||||||||||
Sbjct 2704 GATAAATTTATCACTGTTGAGTTGATCTTGTT 2735
Score = 2071 bits (1121), Expect = 0.0
Identities = 1214/1259 (96%), Gaps = 5/1259 (0%)
Strand=Plus/Plus
Query 24 TTGCAACAAATCTACTCAAAACCCTAACCCCTTTTTCAAA-T-TACTTCCATCTTTAGAT 81
||||||||| ||| |||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 24 TTGCAACAATTCTTCTCAAAACCCTAACCCCTTTTTCAAATTCTACTTCCTTCTTTAGAT 83
Query 82 CGAATCAAATCAATGTCCGTCGACGATCTCCCTCCGTCGTCGGCCTCCGCCGTAACGCCA 141
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 84 CG-ATCAAATCAATGTCCGTCGACGATCTACCTCCGTCACCGGCCTCCGCCGTAACGCCA 142
Query 142 CTAGGCTCCTCCGTGATTCCGATTGTGAACAAGCTCCAAGACATATTCGCTCAGCTAGGA 201
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 143 CTAGGCTCCTCCGTGATTCCAATTGTTAACAAGCTTCAAGACATATTCGCTCAGCTAGGA 202
Query 202 AGTCAATCGACGATCGCTCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAA 261
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGCCAATCGACGATCGCGCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAA 262
Query 262 TCCAGCGTTCTAGAAGCTCTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATTTGC 321
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 263 TCCAGCGTTCTCGAAGCACTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATCTGC 322
Query 322 ACGCGCCGACCTCTCCGTCTCCAGCTTGTTCAGACGAAACCTAGCTCTGATGGTGGATCC 381
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 323 ACGCGCCGACCTCTCCGTCTCCAGCTTGTTCAGACGAAACCTCGCTCCGATGGTGGATCC 382
Query 382 GATGAAGAGTGGGGCGAGTTTCTTCACCACGATCCTGTTAGACGTATCTACGATTTCTCT 441
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 383 GATGAAGAGTGGGGAGAGTTTCTTCACCACGATCCTGTTAAACGTATCTACGATTTCTCT 442
Query 442 GAGATTCGCCGTGAGATTGAGGCGGAGACTAATAGAGTATCAGGAGAGAACAAAGGTGTA 501
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GAGATTCGTCGTGAGATTGAGGCGGAGACTAATAGAGTATCAGGAGAGAACAAAGGTGTA 502
Query 502 TCAGATATTCCGATTGGTTTGAAGATATTTTCACCTAATGTTTTGGATATTAGTCTTGTG 561
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 503 TCAGATATTCCGATTGGTTTGAAAATATTTTCACCTAATGTTTTGGATATCAGTCTTGTG 562
Query 562 GATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAAGTGATATCGAAGCGCGT 621
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 563 GATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAACTGACATCGAAGCGCGT 622
Query 622 ATAAGAACGATGATCTTGACTTACATTAAGGAACCTAGTTGCTTGATACTTGCTGTTAGC 681
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
Sbjct 623 ATAAGAACGATGATCTTGACTTACATTAAGGAATCTAGCTGCTTGATACTTGCTGTTACC 682
Query 682 CCTGCTAATACTGATTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCT 741
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CCTGCTAATACCGATTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCT 742
Query 742 GATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTACTGAT 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTACTGAT 802
Query 802 GCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTA 861
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 803 GCTCGGAATCACCTTCTTGGAAAAACAATACCTCTTCGACTTGGATACGTGGGAGTTGTA 862
Query 862 AATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCATCAAGGATGCTCTTGTTGCAGAG 921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 863 AATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCATCAAGGATGCTCTTATTGCAGAG 922
Query 922 GAAAAGTTCTTTCGTAGTCGTCCAGTTTACAGCGGTCTCACAGATCGTTTGGGTGTCCCT 981
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 923 GAAAAGTTCTTTCTTAGTCGTCCAGCTTACAGCGGTCTCACAGATCGTTTGGGTGTCCCT 982
Query 982 CAACTGGCAAAGAAATTAAATCAGGTCCTTGTTCAACACATCAAGGCACTGCTTCCTAGT 1041
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 983 CAATTGGCAAAGAAATTAAATCAGGTCCTTGTCCAACACATCAAGGCACTGCTTCCTAAT 1042
Query 1042 TTAAAGTCACGTATCAACAATGCATTGTTTGCTACAGCAAAGGAGTATGAGAGCTATGGG 1101
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TTAAAGTCACATATCAACAATGCATTGTTTGCTACAGCAAAGGAGTATGAGAGCTATGGG 1102
Query 1102 GATATAACAGAGTCTAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTTTATTACAAAATAC 1161
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GATATAACAGAGTCCAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTTTATTACAAAATAC 1162
Query 1162 TGCGAAGCATACTCCTCTACCCTGGAAGGGAAAAGTAAAGAAATGTCAACATCTGAGCTC 1221
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TGTGAAGCATACTCCTCAACCCTGGAAGGGAAAAGTAAAGAAATGTCAACATCTGAGCTC 1222
Query 1222 TCGGGTGGAGCAAGAATTCTCTACAT-TTTCCAATCAGTATTTGTTAAGAGCTTAGAGG 1279
|||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 1223 TCGGGTGGAGCAAGAATTCTCTACATCTTTC-AATCAGTCTTTGTTAAGAGCTTAGAGG 1280
> Ahg491315 jgi|Araly1|491315|fgenesh2_kg.7__748__AT4G33650.1
Length=2902
Score = 1016 bits (550), Expect = 0.0
Identities = 957/1151 (83%), Gaps = 38/1151 (3%)
Strand=Plus/Plus
Query 148 TCCTCCGTGATTCCGATTGTGAACAAGCTCCAAGACATATTCGCTCAGCTAGGAAGTCAA 207
|||||||||||||||||||| || ||||| || ||||||||||||||||| ||||| ||
Sbjct 196 TCCTCCGTGATTCCGATTGTAAATAAGCTACAGGACATATTCGCTCAGCTCGGAAGCCAG 255
Query 208 TCGACGATCGCTCTTCCGCAAGTAGCTGTCGTCGGAAGTCAAAGCAGTGGCAAATCCAGC 267
|| ||||||| ||||| || || ||||| || ||||| || ||||||||||| || |||
Sbjct 256 TCTTCGATCGCGCTTCCTCAGGTTGCTGTTGTTGGAAGCCAGAGCAGTGGCAAGTCTAGC 315
Query 268 GTTCTAGAAGCTCTCGTCGGCCGTGACTTTCTTCCTCGTGGCAATGATATTTGCACGCGC 327
|| || ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 316 GTCCTTGAAGCACTCGTCGGCCGTGACTTTCTCCCTCGTGGAAATGATATCTGCACGCGT 375
Query 328 CGACCTCTCCG-TCTCCAGCTTGTTCAGAC-GAAA-CCTAGCTCTGATGGTGGATCCGAT 384
|| ||||| | ||||||||| || ||||| ||| || |||| |||| |||||||||
Sbjct 376 CGTCCTCT-TGTTCTCCAGCTCGTCCAGACTAAAAGCC--GCTCCAATGGCGGATCCGAT 432
Query 385 GAAGAGTGGGGCGAGTTTCTTCACC-ACGATCCTGTTAGACGTATCTACGATTTCTCTGA 443
|| |||||||| ||||||||||||| | ||| | | |||||||| |||||||||||
Sbjct 433 GATGAGTGGGGGGAGTTTCTTCACCTTC-CTCCAGACACTCGTATCTATGATTTCTCTGA 491
Query 444 GATTCGCCGTGAGATTGAGGCGGAGACTAATAGAGTATCAGGAGAGAACAAAGGTGTATC 503
|||||| || || |||||||| ||||| |||||| || |||||||||||||||||||| |
Sbjct 492 GATTCGTCGAGAAATTGAGGCTGAGACGAATAGATTAGCAGGAGAGAACAAAGGTGTAGC 551
Query 504 AGATATTCCGATTGGT-TTGAAGATATT-TTCACCTAATGTTTTGGATATTAGTCTTGTG 561
||||| | |||| || || || || || |||||||||||| |||||||| | ||||||
Sbjct 552 AGATAAACAGATTCGTCTT-AAAAT-TTCTTCACCTAATGTATTGGATATCACACTTGTG 609
Query 562 GATCTTCCTGGTATCACTAAGGTTCCTGTTGGTGATCAGCCAAGTGATATCGAAGCGCGT 621
||||| |||||||| || ||||| || |||||||| ||||||| || || ||||| |||
Sbjct 610 GATCTCCCTGGTATAACCAAGGTGCCAGTTGGTGACCAGCCAACCGACATTGAAGCACGT 669
Query 622 ATAAGAACGATGATCTTGACTTACATTAAGGAACCTAGTTGCTTGATACTT-GCTGTTAG 680
|||||||||||||||||| ||||||| ||| | ||| ||| |||||| || |||||||
Sbjct 670 ATAAGAACGATGATCTTGTCTTACATCAAGTCAGCTACTTGTTTGATA-TTGGCTGTTAC 728
Query 681 CCCTGCTAATACTGATTTAGCAAATTCAGATG-CATTACAAATCGC-AGGAAATGCT-GA 737
||| || ||||| ||||||||||| || |||| | || ||||| || | | | || | ||
Sbjct 729 CCCCGCAAATACCGATTTAGCAAACTCTGATGCCCTT-CAAATTGCTA-GCATTG-TAGA 785
Query 738 TCCTGATGGTCATAGAACCATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTAC 797
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TCCTGATGGTCACAGAACGATAGGTGTAATCACAAAGTTGGATATTATGGACAGAGGTAC 845
Query 798 TGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGT 857
||||||||| || | ||| || ||||| ||||||||||||||||||||||||||||
Sbjct 846 TGATGCTCGAAAGCTCCTACTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGT 905
Query 858 TGTAAATCGTAGTCAAGAGGATATTTTGATGAACCGTAGCA-TCAAGGATGCTCTTGTTG 916
|||||||||| | || |||||||||||| | ||||| | || ||||||| || ||||| |
Sbjct 906 TGTAAATCGTTGCCAGGAGGATATTTTGCTAAACCGCA-CAGTCAAGGAAGCACTTGTCG 964
Query 917 CAGAGGA-AAAGTTCTTTCGTAGTCGTCCAGTTTAC-AGCGGTCTCACAGATCGTTTGGG 974
||||||| ||| ||||| ||||||||||| |||||| | ||||| || |||||||||||
Sbjct 965 CAGAGGAGAAA-TTCTTCCGTAGTCGTCCTGTTTACCAT-GGTCTTACCGATCGTTTGGG 1022
Query 975 TGTCCCTCAACTGGCAAAGAAATTAAATCAGGTCCTTGTTCAACACATCAAGG-CACTGC 1033
| ||||||| || |||||||| ||||||||| ||||||||||||| ||||||| | ||||
Sbjct 1023 TATCCCTCAGCTAGCAAAGAAGTTAAATCAGATCCTTGTTCAACATATCAAGGTC-CTGC 1081
Query 1034 TTCCT-AGTTTAAAGTCACGTATCAAC-AATGCATTGTTTGCTACAGCAAAGGAGTATGA 1091
|||| | ||| ||||| || || || ||||| ||| ||||||||||||||||| || |
Sbjct 1082 TTCCGGA-TTTGAAGTCGCGGAT-AAGTAATGCTTTGGTTGCTACAGCAAAGGAGCATCA 1139
Query 1092 GAGCTATGGGGATATAACAGAGTCTAGGGGTGGTCAAGGAGCTCTTCTCCTCAGTTTTAT 1151
||||||||| || |||||||| || |||| ||||||||||||||||||||||| ||| |
Sbjct 1140 GAGCTATGGTGAAATAACAGAATCAAGGGCTGGTCAAGGAGCTCTTCTCCTCAACTTTCT 1199
Query 1152 -TACAAAATACTGCGAAGCATACTCCTC-TACCCTGGAAGGGAAAAGTAAAGAAATGTCA 1209
| | |||||||| ||||||||||| || | | |||| ||||||||| ||||||||||
Sbjct 1200 CT-CTAAATACTGTGAAGCATACTCTTCATTGC-TGGACGGGAAAAGTGAAGAAATGTCT 1257
Query 1210 ACATCTGAGCTCTCGGGTGGAGCAAGAATTC-TCTACATTTTCCAATCAGTATTTGTTAA 1268
|| || |||||||| || ||||||||||||| | || |||||||| ||| | ||||||||
Sbjct 1258 ACGTCCGAGCTCTCTGGAGGAGCAAGAATTCAT-TATATTTTCCAGTCAATCTTTGTTAA 1316
Query 1269 GAGCTTAGAGG 1279
||| || ||||
Sbjct 1317 GAGTTTGGAGG 1327
Score = 939 bits (508), Expect = 0.0
Identities = 891/1074 (83%), Gaps = 33/1074 (3%)
Strand=Plus/Plus
Query 1365 GGAAGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGC 1424
||| ||||||||||| |||||||| |||| ||||||||||||||||||||| || |||||
Sbjct 1326 GGAGGTTGATCCATGCGAAGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGC 1385
Query 1425 AACTGGTCCCAGATCTGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTCAGGAG 1484
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1386 AACTGGTCCAAGATCCGCATTATTTGTTCCAGATGTTCCATTTGAAGTTCTTGTTAGGAG 1445
Query 1485 GCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCT 1544
||| ||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct 1446 GCAGATATCTCGTTTGTTAGATCCTAGCCTTCAGTGTGCTAGGTTCATTTTTGATGAGCT 1505
Query 1545 AGTAAAGATTAGTCATCAG-TGTATGATGAAAGAGTTACAGCGGTTTCCAGTCCTGCAAA 1603
| |||||||||| ||| || ||||||||||| |||||||| || || |||||||||| ||
Sbjct 1506 AATAAAGATTAGCCAT-AGATGTATGATGAATGAGTTACAACGATTCCCAGTCCTGCGAA 1564
Query 1604 AGCGCATGGATGAGGTTATTGGGAACTTTC-TGCGAGAAGGTCTTGAACCTTC-GCAGGC 1661
||||||||||||||||||| ||| | |||| ||||||||||||||||||| || | || |
Sbjct 1565 AGCGCATGGATGAGGTTATCGGGGA-TTTCCTGCGAGAAGGTCTTGAACCCTCAGAAG-C 1622
Query 1662 AATGATCCGAGATCTTATTGAAATGGAGATGGATTATATAAACACCTCACACCCAAATTT 1721
|||||| | ||| | ||||| |||||||||||||| |||||||| || || ||||||||
Sbjct 1623 AATGATTGGGGATATCATTGATATGGAGATGGATTACATAAACACTTCTCATCCAAATTT 1682
Query 1722 TATCGGGGGAACTAAAGCCGTGGA-GCAAGCAATGCAAACA-GTCAAATCTTCTAGGATT 1779
||| || ||||| || |||||||| | ||||||||| || || || ||||| ||||||
Sbjct 1683 TATTGGTGGAACCAAGGCCGTGGAAGTT-GCAATGCAA-CAAGTGAAGTCTTCGAGGATT 1740
Query 1780 CCGCATCCTGTTGCGCGGCCAAGGGATACTGTGGAGCCTGAGAGGACGGCTTCTTCCGGG 1839
|| |||||||| || || |||| ||| || ||||||||||| || || ||||||||| |
Sbjct 1741 CCCCATCCTGTGGCACGACCAAAGGACACCGTGGAGCCTGATAGAACATCTTCTTCCGCG 1800
Query 1840 AGTCAAATAAAAACCCGATCTTTTCTCGGCCGACAAGCTAATGGAATCATCACTGATCAG 1899
||||| | ||| | |||||||||||||| | |||||||||||||| | |||||||||
Sbjct 1801 AGTCAGGTGAAATCTAGATCTTTTCTCGGCAGGCAAGCTAATGGAATTGTTACTGATCAG 1860
Query 1900 GCAGTTCCAACTGCAGCAGATGCTGAAAGACCTGCACCAGCTGGAA--GC-AC--A-AGC 1953
| |||| | |||||| | |||||||| | |||||||||||| || || | | | |
Sbjct 1861 GGAGTTGTATCTGCAG-A--TGCTGAAAAAGCTGCACCAGCTGCAAATGCGAGTGATA-C 1916
Query 1954 TGGA-GTGGTTTCTCATCAATTTTTCG-GGGGAGTGATGGTC-AGGCAGCTGCTAAAAAC 2010
|| | ||| || | |||||||| || |||| ||||| || || ||| | ||||| |
Sbjct 1917 AAGATGGGGTATCCCTTCAATTTTCCGAGGGG-GTGATACTCGAG-CAGTTACTAAAGAT 1974
Query 2011 AACCTATTAAACAAACCATTCAGCGAAACTACTCAAGA-AGTGTATCAGAACTTGTCAAC 2069
| | ||||||||||||||||||| ||| || | | || | ||| ||| ||| | || |
Sbjct 1975 AGCTTATTAAACAAACCATTCAGTGAAGCTGTTGAGGATA-TGTCTCACAACCTATCGAT 2033
Query 2070 AATCTATTTAAAGGAGCCTCCAACTATTTTGAAGTCATCTGAAACTCATTCAGAACAGGA 2129
|||||| |||||||||| ||| || | |||| | |||| ||||| ||||||||||||||
Sbjct 2034 GATCTATCTAAAGGAGCCCCCAGCTGTCTTGAGGCCATCCGAAACCCATTCAGAACAGGA 2093
Query 2130 -GTCAGTTGAGATTGAGATAACAAAGCTATTATTGAAATCCTACTATGACATTGTAAGGA 2188
| ||||||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||
Sbjct 2094 AG-CAGTTGAGATTCAGATAACAAAGCTGTTACTAAAATCATACTATGACATTGTAAGGA 2152
Query 2189 AGAATGTCGAGGACTTGGTCCCAAAAGCAATCATGCATTTTCTGGTAAATTACACGAAAC 2248
||||| | ||||||| ||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 2153 AGAATATTGAGGACTCGGTACCAAAAGCAATCATGCATTTCCTGGTAAACCACACGAAAC 2212
Query 2249 GTGAGCTGCACAATGTTTTCATCGAGAAGCTTTACAGGGAGAACTTAATTGAAGAACTGT 2308
|||||||||| || || |||||| |||||||||||||||||||||| |||||||| |||
Sbjct 2213 GTGAGCTGCATAACGTCTTCATCAAGAAGCTTTACAGGGAGAACTTGTTTGAAGAAATGT 2272
Query 2309 TGAAAGAGCCCGATGAGTTAGC-GATAAAGAGGAAACGCACGCAAGAGACTCTTCGCATT 2367
|| ||||||| |||||| |||| | ||| ||||||||| ||||| |||||||||| | ||
Sbjct 2273 TGCAAGAGCCAGATGAGATAGCAGTTAA-GAGGAAACGAACGCAGGAGACTCTTCACGTT 2331
Query 2368 CTTCAGCAGGCTAATC-GGACGTTAGACGAGCTGCCGTTAGAAGCTGAATCGGT 2420
|||||||| ||| | | |||| |||| |||||||| | ||||| || |||||
Sbjct 2332 CTTCAGCAAGCTTA-CAGGACACTAGATGAGCTGCCACTGGAAGCAGATTCGGT 2384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107033588450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5