BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14160.1

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905753 jgi|Araly1|905753|Al_scaffold_0003_2881                    292    6e-79
  Ahg906143 jgi|Araly1|906143|Al_scaffold_0003_3271                   84.2    4e-16


> Ahg905753 jgi|Araly1|905753|Al_scaffold_0003_2881
Length=378

 Score =  292 bits (158),  Expect = 6e-79
 Identities = 235/269 (87%), Gaps = 18/269 (7%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCACAAATGTTGAATTCACGTGCTATGTTGGCAATTTGGAGTCGGACACAGAA  60
            ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  1    ATGGCGTCCACAAATGTTGAATTCACTTGCTATGTTGGCAATTTGGAGTCAGACACAGAA  60

Query  61   GAAAATGATCTTAAGAATGCATTTTCTCAGTTTGGTGACGTTATA-CATTCTAATGTCAT  119
            |||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct  61   GAAAATGATCTTGAGAATGCATTTTCTCAGTTTGGCGACGTTATAGC-TTCTAATGTCAT  119

Query  120  TTGCGAAAGAGATT-----A-TG--AAT-A-T-TT-TGATTATGAAAACGGCTACGAATA  167
            | ||||||||||||     | ||  ||| | | || ||||| |||| ||| |||||||| 
Sbjct  120  TCGCGAAAGAGATTACGAAAGTGATAATGAGTATTATGATTCTGAAGACGACTACGAATG  179

Query  168  TGA-CCTTCCGGTCT-CTGTGACAACGAGGAAGGTATATGGATTTGTTAGTTTCAAAGAT  225
            |||   || | |||| |  |||||||||||||||||||||||||||||||||| ||||||
Sbjct  180  TGAGAGTT-CAGTCTAC-ATGACAACGAGGAAGGTATATGGATTTGTTAGTTTTAAAGAT  237

Query  226  GAGAAATCAATGAAGGATGCCATTAAGGG  254
            ||||||||||||||||||||| |||||||
Sbjct  238  GAGAAATCAATGAAGGATGCCGTTAAGGG  266


> Ahg906143 jgi|Araly1|906143|Al_scaffold_0003_3271
Length=252

 Score = 84.2 bits (45),  Expect = 4e-16
 Identities = 52/55 (95%), Gaps = 1/55 (2%)
 Strand=Plus/Plus

Query  201  ATATGGATTTGTTAGTTTCAAAGATGAGAAATCAATGAAGGATGCCATTAA-GGG  254
            ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct  156  ATATGGATTTGTTAGTTTCAAAGATGAGAAATCCATGAAGGACGCCATTAATGGG  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8974241335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5