BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14170.1
Length=2195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480337 jgi|Araly1|480337|fgenesh2_kg.3__3038__AT2G14170.1 2974 0.0
Ahg905755 jgi|Araly1|905755|Al_scaffold_0003_2883 558 5e-158
> Ahg480337 jgi|Araly1|480337|fgenesh2_kg.3__3038__AT2G14170.1
Length=1908
Score = 2974 bits (1610), Expect = 0.0
Identities = 1832/1935 (95%), Gaps = 32/1935 (2%)
Strand=Plus/Plus
Query 2 TGGTGAGAGTCAAACAAAAGAATCTTGAATC-TTATAGATCTAACGGTACATATCCACCC 60
|||||| |||||||||||||||||||||||| ||||| |||||||||||||||| | ||
Sbjct 1 TGGTGAAAGTCAAACAAAAGAATCTTGAATCTTTATATATCTAACGGTACATATTTAACC 60
Query 61 ACGTGGCGAAATCCAACCACTTCATTCGC-ACCCGATCAACATCGAGTCAGCATTCACTC 119
||||||| ||||||||||| | ||||| ||||||||||||||||||||||| ||||||
Sbjct 61 ACGTGGCAAAATCCAACCA---C-TTCGCAACCCGATCAACATCGAGTCAGCACTCACTC 116
Query 120 ATCACTCAAATCCAAAACCAAAAGGAGACGCTTATACAAAGAAGCAGACGACAACACCAA 179
||||||||||||||||||| ||| | | | ||| |||||||| ||||||
Sbjct 117 ATCACTCAAATCCAAAACC-AAA--A-A-G--------AAGCAGCAGACG---GCACCAA 160
Query 180 ACTCCGATCATCATCATcaacaacaacaacaacaacaacGATGCTGCTTCGAATTTCTGG 239
|||||||||||||||| ||||||||| | | | ||||||||||||||| ||| |||||||
Sbjct 161 ACTCCGATCATCATCAACAACAACAA-ATC-A-AACAACGATGCTGCTACGAGTTTCTGG 217
Query 240 TAACAATCTGAGACCTTTGAGACCACAATTTCTCGCTCTTCGAAGCTCTTGGTTATCAAC 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 TAACAATCTGAGACCTTTGAGACCTCAATTTCTCGCTCTTCGAAGCTCTTGGTTATCAAC 277
Query 300 TTCGCCGGAGCAATCTACTCAACCACAAATGCCTCCGAGAGTACCAAATCTTATTGGAGG 359
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 278 GTCGCCGGAGCAATCTACTCAACCAAAAATGCCTCCGAGAGTACCAAATCTTATTGGAGG 337
Query 360 TTCTTTTGTTGAGTCTCAATCATCTTCGTTTATCGATGTTATAAACCCTGCTACACAAGA 419
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 338 TTCTTTTGTTGATTCTCAATCATCTTCACATATCGATGTTATAAACCCTGCTACACAAGA 397
Query 420 GGTTGTATCTAAAGTTCCATTGACTACTAATGAAGAGTTTAAAGCTGCGGTATCCGCTGC 479
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 398 AGTTGTGTCTAAAGTTCCATTGACTACTAATGAAGAGTTTAAGGCGGCGGTATCCGCTGC 457
Query 480 GAAGCAAGCGTTTCCGTTGTGGAGAAACACGCCGATTACTACCCGGCAGCGTGTTATGCT 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GAAGCAAGCGTTTCCGTTATGGAGAAACACGCCGATTACTACCCGGCAGCGTGTTATGCT 517
Query 540 AAAGTTTCAAGAGCTTATACGCAAGAATATGGATAAACTTGCTATGAACATCACAACCGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 518 AAAGTTTCAAGAGCTTATACGCAAGAATATGGATAAACTTGCTATGAACATCACTACCGA 577
Query 600 GCAAGGGAAGACTTTAAAGGATTCACATGGTGATATCTTCCGTGGGTTAGAGGTTGTGGA 659
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GCAAGGAAAGACGTTGAAGGATTCACATGGTGATATCTTCCGTGGGTTAGAGGTTGTGGA 637
Query 660 GCATGCGTGTGGAATGGCAACCTTACAGATGGGTGAATATCTCCCCAATGTGTCGAACGG 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 638 GCATGCGTGTGGAATGGCAACCTTACAGATGGGTGAATATGTCCCCAATGTGTCGAATGG 697
Query 720 AGTTGATACATATAGTATTAGAGAGCCATTAGGTGTTTGTGCTGGCATTTGTCCTTTTAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 698 AGTTGATACATATAGTATTAGAGAGCCATTAGGTGTTTGTGCTGGCATTTGTCCATTCAA 757
Query 780 CTTTCCAGCCATGATTCCTTTATGGATGTTTCCTGTTGCAGTGACATGTGGTAATACCTT 839
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CTTTCCAGCAATGATTCCTTTATGGATGTTTCCTGTTGCAGTGACATGTGGTAATACCTT 817
Query 840 TATTCTGAAGCCATCAGAGAAGGATCCCGGTGCTTCTGTAATACTTGCCGAGTTGGCAAT 899
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 818 TATTCTGAAGCCATCAGAGAAGGATCCTGGTGCTTCTGTATTACTTGCGGAGTTGGCAAT 877
Query 900 GGAAGCTGGTTTACCTGATGGGGTTCTCAATATCGTTCACGGAACCAATGATACTGTGAA 959
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 878 GGAAGCTGGATTACCTGATGGGGTTCTCAATATCGTTCACGGCACCAATGATACTGTGAA 937
Query 960 TGCTATCTGTGATGATGAAGATATAAGGGCTGTTTCTTTTGTTGGCTCCAACACGGCTGG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 938 TGCTATCTGTGATGATGAAGATATAAGGGCTGTTTCTTTTGTTGGCTCCAACACTGCTGG 997
Query 1020 AATGCATATATACGCAAGAGCAGCAGCAAAAGGAAAACGTATTCAGTCAAATATGGGGGC 1079
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 998 AATGCATATATATGCAAGAGCAGCAGCTAAAGGAAAACGTATTCAGTCAAATATGGGGGC 1057
Query 1080 GAAAAATCATGGACTTGTCTTGCCTGATGCCAACATCGATGCAACTTTAAATGCGCTACT 1139
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1058 GAAAAATCATGGACTTGTCTTACCTGATGCCAACGTCGATGCAACTTTAAATGCGCTACT 1117
Query 1140 TGCTGCTGGGTTTGGTGCCGCTGGACAGAGATGCATGGCACTGAGTACAGTGGTTTTTGT 1199
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1118 TGCTGCTGGGTTTGGTGCCGCTGGCCAGAGATGCATGGCACTGAGTACAGTGGTTTTTGT 1177
Query 1200 TGGCGATGCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCTAAGGCCCTTAAAGTCAC 1259
||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1178 TGGGGATTCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCGAAGGCCCTTAAAGTCAC 1237
Query 1260 ATGTGGGTCAGAACCAGATGCAGACCTGGGTCCTGTGATTAGTAAACAGGCGAAAGAACG 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1238 ATGTGGGTCAGAACCAGATGCAGACCTGGGACCTGTGATTAGTAAACAGGCGAAAGAACG 1297
Query 1320 GATATGCCGGTTGATTCAGTCTGGTGTAGATGATGGTGCTAAATTGCTGCTTGACGGAAG 1379
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1298 GATATGCCGATTGATTCAGTCTGGTGTAGACGATGGTGCTAAATTGCTGCTTGACGGAAG 1357
Query 1380 AGATATTGTGGTTCCAGGATATGAGAAAGGGAATTTTATCGGTCCTACCATTCTATCTGG 1439
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 1358 AGATATTGTGGTTCCAGGATACGAGAAAGGGAATTTTATCGGTCCAACCATTTTATCTGG 1417
Query 1440 TGTTACCCCAGACATGGAGTGTTACAAGGAGGAAATATTTGGCCCTGTTCTTGTGTGCAT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 TGTTACCCCAGACATGGAGTGTTACAAGGAGGAAATATTTGGCCCTGTTCTTGTGTGCAT 1477
Query 1500 GCAGGCAAACAGTTTTGATGAGGCCATATCTATAATAAATAAAAACAAGTATGGGAACGG 1559
| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1478 GGAGGCAAGCAGTTTTGATGAAGCCATATCCATAATAAATAAAAACAAGTATGGGAACGG 1537
Query 1560 TGCTGCGATTTTCACGTCGTCCGGGGCAGCAGCAAGAAAGTTCCAGATGGACATAGAAGC 1619
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1538 TGCTGCAATATTCACCTCGTCGGGGGCAGCAGCAAGAAAGTTCCAGATGGACATAGAAGC 1597
Query 1620 AGGACAGATCGGTATTAATGTTCCAATCCCGGTTCCATTACCGTTCTTTTCCTTCACCGG 1679
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1598 AGGACAGATCGGTATTAATGTTCCAATCCCGGTTCCATTACCGTTCTTCTCCTTCACCGG 1657
Query 1680 GAACAAGGCCTCATTCGCAGGAGATCTTAACTTCTATGGCAAAGCAGGAGTGGACTTTTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 GAACAAGGCCTCATTCGCAGGAGATCTTAACTTCTATGGCAAAGCAGGAGTGGACTTTTT 1717
Query 1740 CACTCAGATCAAAACTGTTACACAACAGTGGAAAGATATTCCAACTTCAGTATCTCTGGC 1799
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1718 CACTCAAATCAAGACTGTTACACAACAGTGGAAAGATATTCCAACTTCAGTATCTCTCGC 1777
Query 1800 AATGCCAACGTCTCAAAAGCAATAATGAGACCTTAACTTCAAATACtttttttACTTTTG 1859
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1778 AATGCCAACATCGCAAAAGCAATAATGAGACCTTAACTTCAAATACTTTT---ACTTTTG 1834
Query 1860 GATTATCGAATCAGCTTCAAGAAGAACCCTTTGTTTATTTTT--CAGCT-CTCTAGTATT 1916
|||| ||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||
Sbjct 1835 GATTTTCGAATCAGCTTCAAGAAGAACCCTTTGTTTCTTTTTTTCAGCTGC-CTAGTATT 1893
Query 1917 TTCTCATGCTTAGTT 1931
|||| ||||||||||
Sbjct 1894 TTCTTATGCTTAGTT 1908
> Ahg905755 jgi|Araly1|905755|Al_scaffold_0003_2883
Length=459
Score = 558 bits (302), Expect = 5e-158
Identities = 375/407 (92%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 1063 CAGTCAAATATGGGGGCGAAAAATCATGGACTTGTCTTGCCTGATGCCAACATCGATGCA 1122
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 CAGTCAAATATGGGGGCAAAAAATCATGGACTTGTCTTACCTGATGCCAACATAGATGCA 60
Query 1123 ACTTTAAATGCGCTACTTGCTGCTGGGTTTGGTGCCGCTGGACAGAGATGCATGGCACTG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTTAAATGCGCTACTTGCTGCTGGGTTTGGTGCCGCTGGACAGAGATGCATGGCACTG 120
Query 1183 AGTACAGTGGTTTTTGTTGGCGATGCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCT 1242
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AGTACAGTGGTTTTTGTTGGGGATTCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCG 180
Query 1243 AAGGCCCTTAAAGTCACATGTGGGTCAGAACCAGATGCAGACCTGGGTCCTGTGATTAGT 1302
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AAAGCCCTTAAAGTCACATGTGGGTCAAAACCAGATGCAGACCTGGGTCCTGTGATTAGT 240
Query 1303 AAACAGGCGAAAGAACGGATATGCCGGTTGATTCAGTCTGGTGTAGATGATGGTGCTAAA 1362
|||||| || | | || ||||||| ||||||||||||||||||||||
Sbjct 241 AAACAG-CG------C---T-TG-------ATTCAGTTTGGTGTAGATGATGGTGCTAAA 282
Query 1363 TTGCTGCTTGACGGAAGAGATATTGTGGTTCCAGGATATGAGAAAGGGAATTTTATCGGT 1422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 283 TTGCTGCTTGACGGAAGAGATATTGTGGTTCCAGGATACGAGAAAGGGAATTTTATCGGT 342
Query 1423 CCTACCATTCTATCTGGTGTTACCCCAGACATGGAGTGTTACAAGGA 1469
||||| ||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 343 CCTACAATTTTATATGGTGTTACCCCAGACATGGAGTGCTACAAGGA 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82617741405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5