BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14210.1

Length=1096
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343054 jgi|Araly1|343054|fgenesh1_pg.C_scaffold_3002817           534    4e-151


> Ahg343054 jgi|Araly1|343054|fgenesh1_pg.C_scaffold_3002817
Length=336

 Score =  534 bits (289),  Expect = 4e-151
 Identities = 321/336 (96%), Gaps = 3/336 (1%)
 Strand=Plus/Plus

Query  468  ATGAATGCTAACGACCTACAAAACCTTGAAGACCAGCTAGTAACAAGTCTAAAAGGTGTT  527
            ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGAATGCTAATGACCTACAAAATCTTGAAGACCAGCTAGTATCAAGTCTAAAAGGTGTT  60

Query  528  CGTCTCAAAAAGGATCAACTTATGACAAATGAAATCAGAGAACTTAATCGTAAGGGACAA  587
            ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct  61   CGTCTCAAAAAGGATCAACTTATGACAGATGAAATCAGAGAACTCAATCGTAAGGGGCAA  120

Query  588  ATCATCCAAAAAGAGAATCACGAGCTACAAAATATTGTAGATATAATGCGTAAGGAAAAT  647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATCATCCAAAAAGAGAATCACGAGCTACAAAATATTGTAGATATAATGCGTAAGGAAAAT  180

Query  648  ATTAAATTGCAAAAGAAGGTTCATGGAAGAACAAATGCGATTGAAGGCAATTCAAGTGTA  707
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  181  ATTAAATTGCAAAAGAAGGTTCATGGAAGAACAAATGCGATTGAAGGCAGTTCAAGTGTA  240

Query  708  GATCCAATAAGCAATGGAACCACAACATATGCACCACCGCAACTTCAACTCATACAACTA  767
            | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct  241  GCTCCAATAAGCAATGGAACCGCAACATATGCACCACCGCAACTTCAACTTATACAAGTA  300

Query  768  CAACCAGCTCCTAGAGAAAAATCAATCAGACTAGGG  803
            |||||   ||| ||||||||||||||||||||||||
Sbjct  301  CAACC---TCCAAGAGAAAAATCAATCAGACTAGGG  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40829644107


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5