BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14247.1

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480339 jgi|Araly1|480339|fgenesh2_kg.3__3040__AT2G14247.1         370    5e-102


> Ahg480339 jgi|Araly1|480339|fgenesh2_kg.3__3040__AT2G14247.1
Length=350

 Score =  370 bits (200),  Expect = 5e-102
 Identities = 318/370 (86%), Gaps = 27/370 (7%)
 Strand=Plus/Plus

Query  1    AATCTTTCTTTATTTTTTGCATCTCTATCTGTCACACACCAATTCTTATTTTATGTATAT  60
            ||||||| |||||||||||||| ||||||||||||||| |||   ||  |||||||||||
Sbjct  1    AATCTTTGTTTATTTTTTGCATGTCTATCTGTCACACAACAA---TT-GTTTATGTATAT  56

Query  61   ATATTGACGCATACAT-C--TC-C-AAATTAATCAATA-GCTTATCTAGTTCTTGACTGT  114
            |||||||||||||||| |  || | |||||||||| || ||||||||||||||||| |||
Sbjct  57   ATATTGACGCATACATTCACTCTCCAAATTAATCA-TAAGCTTATCTAGTTCTTGATTGT  115

Query  115  TCAA-CGATCAATGGCACCATCCGCTGCAATGCTCATACTCTCACATCCTCTAGTTAGCC  173
            |||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct  116  TCAAACCATCAATGGCACCATCGGCTGCAATGCTCATACTCTCACATCCTCTAATTAGCC  175

Query  174  ACAAAGCTAAGAATCAGTCTCTGTCATCGCCGTCGTCTGTTAAGTCGACACGTGTCTTCG  233
            ||||| | | |||||||||||   | | |   |  |     ||||| ||||||||||| |
Sbjct  176  ACAAAACGATGAATCAGTCTC---C-T-G---T--T-----AAGTCAACACGTGTCTTTG  220

Query  234  GTTTTCTTTGGCCTTGGAAGGCATTAGACAATGAGGATCATTCCGCGGTTGTTCTCGGCC  293
             |||||||| |||||||||||||| ||||  |||||||| ||||||||||| ||| ||||
Sbjct  221  ATTTTCTTTTGCCTTGGAAGGCATCAGACGGTGAGGATCGTTCCGCGGTTGGTCTTGGCC  280

Query  294  GGCTCTTTGGCGATCCGGCTACTATCGAGAAGCGCTTCCAAGAAGCTCTTGAACAAAGCT  353
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  281  GGCTATTTGGCGATCCGGCTACTATCGAGAAGCGCTTCCAAGAAGCTCTTGAACTTAGCT  340

Query  354  GTTGGTAATT  363
            | ||||||||
Sbjct  341  GCTGGTAATT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17704193296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5