BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14255.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906161 jgi|Araly1|906161|Al_scaffold_0003_3289 1397 0.0
> Ahg906161 jgi|Araly1|906161|Al_scaffold_0003_3289
Length=867
Score = 1397 bits (756), Expect = 0.0
Identities = 830/867 (96%), Gaps = 0/867 (0%)
Strand=Plus/Plus
Query 745 ATGCGAACTCGTAAGAATAGTTTTGTGGACAAGATCTTCTGTGGAAAACTGGGAGAGACT 804
|||||||||| ||| ||||||||| ||||||||||||| ||||||||| |||||||||||
Sbjct 1 ATGCGAACTCATAATAATAGTTTTTTGGACAAGATCTTTTGTGGAAAATTGGGAGAGACT 60
Query 805 AGCTATGCTCCTATGTTGTTCAGCTTAATAGTCATTCTTATGGTCCTCTTCATCACATCC 864
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTATGCTTCTATGTTGTTCAGCTTAATAGTCATTCTTATGGTCCTCTTCATCACATCC 120
Query 865 ATTGTTTCAGCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTGTGGGCATGTTTC 924
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 ATTGTTTCAGCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTATGGGCGTGTTTC 180
Query 925 GGTCTTTCATGTGGTGTTTACGCACTGATAACTTTCTATCGTGTTAGCAGGAAAGATCCC 984
|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 181 GGTCTTTCATGTGGTGTTTACGCACTGATAGCTTTCTATCGTGTTACCAGAAAAGATCCC 240
Query 985 GGGTACGTTAAAAGAACCGGTGAAGCTAACAGCCAACACACTGCCAACGACCCTTTGATT 1044
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTACGTTAAAAGAACTGGTGAAGTTAACAGCCAACACACTGCCAACGACCCTTTGATT 300
Query 1045 GATATCAATTTCAAAAACCCCTCATGGAAAGGAAACTGGTCCCAACTCTGCCCCACTTGC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GATATCAATTTCAAAAACCCCTCATGGAAAGGAAACTGGTCCCAACTCTGCCCTACTTGC 360
Query 1105 AAGATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAG 1164
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 361 AAGATAATTAGACCGGTGCGATCTAAGCACTGTCCCACCTGTAAGCGCTGCGTTGAGCAG 420
Query 1165 TTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGAAGAATAAACGCTACTTC 1224
||||||||||||||||| ||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 421 TTTGACCATCACTGCCCTTGGATTTCCAACTGTGTCGGTAAAAAAAATAAACGCGACTTT 480
Query 1225 TTAGTCTTTGTGATCATGGGAGCTTTAACATCATTCGTTGGTGGCACAACTGCTGTTCAA 1284
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TTAGTCTTTGTGATCATGGGAGCTTTAACATCATTCGTTGGTGGTACAACTGCTGTTCAA 540
Query 1285 AGATTATGGAGAGGTATCCCACAGGTACACCACGGAGAATCATGGATTAAACATATAGTC 1344
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 541 AGATTATGGAGAGGTATCCCACAGATACACCACAGAGAATCATGGATTAAACATATAGTC 600
Query 1345 ATTGAACACCCTGATGCTGCCGTGTTTCTGTTTTTCGACTTACTCATTTTCATTGCGACT 1404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTGAACACCCCGATGCTGCTGTGTTTCTGTTTTTCGACTTACTCATTTTCATTGCGACA 660
Query 1405 ATGACATTGACAATCTCACAGTCTTATATGATAGCTCGGAATATTACAACCAACGAATTA 1464
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGACGTTGACAATCTCACAATCTTATATGATAGCTCGGAATATTACAACCAACGAATTA 720
Query 1465 TGGAACGCGAAGAGATTCAGTTATTTGCGGGGACCTGACGGAAGATTCTACAACCCTTAT 1524
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 721 TGGAACGCAAAAAGATTCAGTTATTTGCGGGGACCTGATGGAAGATTCTACAACCCATAT 780
Query 1525 AACCACGGCTTGCGAAGAAACTGCACCGATTTTTTGGTTCATGGCTACACCAGGGACGAC 1584
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 AACCACGGCTGGCGAAGAAACTGCACCGATTTTTTGCTTCATGGCTACACCAGGGACGAC 840
Query 1585 GAGGTTGTCCCGTCTTCAATTCTCTGA 1611
|||||||||||||||||||||||||||
Sbjct 841 GAGGTTGTCCCGTCTTCAATTCTCTGA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5