BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14260.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931157 jgi|Araly1|931157|scaffold_303614.1 1751 0.0
> Ahg931157 jgi|Araly1|931157|scaffold_303614.1
Length=1190
Score = 1751 bits (948), Expect = 0.0
Identities = 1115/1193 (93%), Gaps = 22/1193 (2%)
Strand=Plus/Plus
Query 90 AAACGGGTCAAATACTATGAACTTGATCCTTGCATCGTTCTCTTTGGCCCCTTGCTTCTG 149
||||||||||||||||||||| ||| | |||||||| | |||||||||||||||||||||
Sbjct 6 AAACGGGTCAAATACTATGAAATTGGTTCTTGCATCATCCTCTTTGGCCCCTTGCTTCTG 65
Query 150 TGTTCGATTCTTTCCTTCAAACCATAACAATCTCAATCTCTT-ATTCCCAGGGCAACGAA 208
||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 66 TGTTCGATTCTTTCCACCAAACCATAACAATCTCAATC-CTTCATTCTCAGGGCAACGAA 124
Query 209 AGATTCAAGTTA-----G--TTGCG---G-T--GGTAAGAGTGAGGTGTTGAAGAGTGAT 255
||||| || ||| | || || | | |||| ||||||||||||||||||||||
Sbjct 125 AGATT-AAATTACGCGCGATTTCCGTTAGTTGCGGTATGAGTGAGGTGTTGAAGAGTGAT 183
Query 256 ACAATGGAACCTCATGAAGCAGAAACGTTTGTGAACAAGAGAACCCTTTATGCTCCCATT 315
||||||| | | ||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 184 TTAATGGAA-C-C-TGAAGCAGAAACGTTGGTGAACAAGAGAAATCTTTATGCTCCTATT 240
Query 316 GAGCCATATAGCAGTGGAAATTTAAAGGTTTCAGATGTTCACACTCTCTACTGGGAGCAA 375
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GAGCCATATAGCACTGGAAATTTAAAGGTTTCAGATGTTCACACACTCTACTGGGAGCAA 300
Query 376 TCAGGCAAACCCGATGGACACCCGGTTGTTTTTCTTCACGGCGGGCCGGGAGGAGGGACG 435
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 301 TCAGGAAAACCCGATGGACACCCAGTTGTTTTTCTTCACGGAGGGCCGGGAGGAGGGACA 360
Query 436 GCTCCTAGTAATAGGAGATTCTTCGATCCGGAGTTTTATCGGATTGTTCTGTTTGATCAG 495
|||||| ||||||||||| |||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 361 GCTCCTGGTAATAGGAGAGTCTTCGATCCTGAGTTTTATCGCATTATTCTGTTTGACCAG 420
Query 496 AGAGGTGCGGGGAAGAGTACACCGCATGCTTGTTTGGAGGAAAACACCACATGGGACCTT 555
|||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 421 AGAGGTGCAGGAAAGAGTACACCACATGCTTGCTTGGAGGAAAACACCACATGGGACCTT 480
Query 556 GTGAATGATATTGAAAAACTAAGAGAACATTTGAAAATACCTGAATGGCTGGTTTTTGGA 615
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 GTAAATGATATTGAAAAACTAAGAGAACATTTGAAAATACCGGAATGGCTGGTTTTTGGT 540
Query 616 GGATCATGGGGAAGCACTCTAGCTCTTGCATACAGTCAGTCTCACCCTGACAAGGTTACT 675
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 541 GGATCATGGGGAAGCACTCTAGCACTTGCGTACAGCCAGTCTCACCCTGACAAGGTTACT 600
Query 676 GGTTTGGTCCTTAGAGGGATCTTTTTGTTGCGTAAAAAGGAGATTGACTGGTTTTACGAG 735
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GGTTTAGTCCTTAGAGGGATCTTTTTGTTGCGTAAAAAGGAGATTGATTGGTTTTACGAG 660
Query 736 GGCGGTGCTGCTGCTATTTACCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCAGAA 795
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTGGTGCTGCTGCTATATACCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCAGAA 720
Query 796 AACGAGAGAGGTAGTAGCCTTGTGGACGCGTATCACAAAAGATTGAATTCTGATGATCTG 855
||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 721 AACGAGAGA-G--GTAGCCTTGTGGATGCATATCACAAAAGATTGAATTCTGATGATCTG 777
Query 856 GAAATTCAATACGCAGCTGCAAGAGCTTGGACTAAATGGGAAATGATGACTGCTTATCTT 915
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGGAAATGATGACTGCTTATCTT 837
Query 916 CGTCCAAATCTTGAAAACGTTCAAAAGGCAGAGGATGATAAATTTTCATTGGCGTTTGCA 975
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 CGTCCAAATCTTGAAAACGTTCAAAAGGCAGAGGATGATAAATTTTCTTTGGCGTTTGCA 897
Query 976 AGGATTGAAAATCACTACTTTGTTAACAAAGGTTTCTTCCCGTCGGACTCACACTTGCTA 1035
|||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||
Sbjct 898 AGGATTGAAAATCACTACTTTGTTAACAAAGGTTTCTTTCCATCGGATTCATACTTGCTA 957
Query 1036 GACAATGTTGATAAAATACGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GACAATGTTGATAAAATACGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA 1017
Query 1096 TGCTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGCAGAACTCAAG 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGCTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGCAGAACTCAAG 1077
Query 1156 ATTGTTTATGATGCTGGGCACTCGGCAAATGAGCCAGGAATATCAGCGGAACTCGTGGTT 1215
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1078 ATTGTTTATGATGCTGGGCACTCGGCAAATGAGCCAGGAATAGCAGCGGAACTCGTGGTT 1137
Query 1216 GCCAATGAAAAGATGAAAGCACTTATGGGATGAAGTATTTGATGGAATGAAAG 1268
||||||||||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct 1138 GCCAATGAAAAGATGAAAGCACTTATGAGATAAAGTATTTGATGGAAAGAAAG 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5