BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G14365.1

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481098 jgi|Araly1|481098|fgenesh2_kg.4__158__AT2G14365.1          357    3e-98


> Ahg481098 jgi|Araly1|481098|fgenesh2_kg.4__158__AT2G14365.1
Length=322

 Score =  357 bits (193),  Expect = 3e-98
 Identities = 284/326 (87%), Gaps = 14/326 (4%)
 Strand=Plus/Plus

Query  3    AGAATTATTAACCATAAGGAAGAAAATAATGGCTATGACACAAGTTTTTGTGATTTTTAT  62
            |||| ||||||| ||||| |||||||||||| |||||||| ||| |||||||||||||||
Sbjct  1    AGAAGTATTAACAATAAGAAAGAAAATAATGACTATGACAAAAGCTTTTGTGATTTTTAT  60

Query  63   TCTTCTAGCAACGTCGTTGTGCAACTCCAATGCTTTGCCTTCATCGGTAATCAACGGATT  122
            |||| |||||||||||||||||||||||||||||||||||||||||||  |||| |||||
Sbjct  61   TCTTGTAGCAACGTCGTTGTGCAACTCCAATGCTTTGCCTTCATCGGTTGTCAATGGATT  120

Query  123  TGGATATGATTATTGCATTGTAGAATGTTCAATAACTTTTTTAGATGATGCATGCAAGCC  182
            |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct  121  TGGATATGATTATTGCATTGCAAAATGTTCAATAACTTTTTTAGATGATGTATGCAAGCC  180

Query  183  ATTGTGTATA-GACAGGGGGTACTCGGATGGAGGATGTATTGGTTTATCACCACATTTTA  241
              |||||||| | || ||||||||| |||||||| ||||||||   |  |||| |  |||
Sbjct  181  GGTGTGTATAAG-CAAGGGGTACTCAGATGGAGGGTGTATTGG---AGGACCAAAACTTA  236

Query  242  AATGTTGTTGTAAGAAATGATATAAATCAATA---------GTAAACTGGCGATTTGATA  292
            |||||||||||||||||||||| |||||||||         ||||||| |||||||||||
Sbjct  237  AATGTTGTTGTAAGAAATGATAGAAATCAATAATCTTTATAGTAAACTAGCGATTTGATA  296

Query  293  TCTGGTTTGTTTTTTGATGAAATAAA  318
            ||| ||||||| || |||||||||||
Sbjct  297  TCTTGTTTGTTCTTGGATGAAATAAA  322



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11904543768


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5