BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14500.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343060 jgi|Araly1|343060|fgenesh1_pg.C_scaffold_3002823 601 4e-171
> Ahg343060 jgi|Araly1|343060|fgenesh1_pg.C_scaffold_3002823
Length=864
Score = 601 bits (325), Expect = 4e-171
Identities = 672/835 (80%), Gaps = 42/835 (5%)
Strand=Plus/Plus
Query 179 ATGGTTGCGTGCTGTACAATCCAGACGAAGATAGGATTTACAAATCGGTGAGAGACTTCT 238
|||||||| || ||||||||||||| ||| | |||||||||||||| || ||||||||||
Sbjct 23 ATGGTTGCCTGTTGTACAATCCAGAGGAATACAGGATTTACAAATCCGTAAGAGACTTCT 82
Query 239 CTGGGACTATATTCCTTGCAAACTCGGGTAATTGGTTTCTTGTAATGGATTCTAAATCCA 298
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 83 CAGGGACTATGTTCCTTGCAAACTCGGGTAATTGGTTTCTTGTGATGGATTCTAAATCCA 142
Query 299 ATCTCTATATAATAGATGTGTTTAGCGAGAATAGGATCGATCTTCCGCCTCTAGAGTC-T 357
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 143 ATCTCTATATCATAGATGTGTTTAGCGAGAATAGGATCGATCTTCCGCCTCTAGAGTCGT 202
Query 358 CTCCTGTCAGATAACTTTACTTTCGAGCAAAAAGGGGATAAGGAATTGAAATGGCAAGCA 417
||| ||||||| | ||||| | |||| | ||| |||||| |||| |||| ||||| |
Sbjct 203 -TCCAGTCAGATTATTTTACCCTAGAGCGACTAGGAGATAAGAAATTCAAATTGCAAGTA 261
Query 418 TCTAATGATCA-GAT--TC-TAGTTTTTAGATTACCAAGAG-CTGAAGAGTTAAGAGGTA 472
|| || | || ||| || | |||||| | || || || | |||| |||||||||
Sbjct 262 ACTGATCACCATGATGGTCAT-GTTTTTT-AC-AC-AATAGGC-GAAGTTTTAAGAGGTC 316
Query 473 TTTTGTGGGTAGACGAGAAAATGAAAGAGTTTGTTGCAGTTTGGTTCTTGGAAGACTCTT 532
|||||||||||||| |||||| ||||||||||||| |||||||||||| || || ||
Sbjct 317 TTTTGTGGGTAGACAAGAAAACAAAAGAGTTTGTTGTAGTTTGGTTCTTCGATTACAATT 376
Query 533 GCAACTTTTTAGCCTTTTACAAGAAAGCTGATGATCATTACAGTCACATTCA-ACTA-GA 590
|||| ||| |||||| || |||||||| || ||||||||||||| ||||| | | || |
Sbjct 377 GCAAATTTCTAGCCTATTGCAAGAAAGGTGGTGATCATTACAGTTACATTGAGA-TATGT 435
Query 591 ATA-TGTCATCACCGATGTGTTTCAAAGCGTATCTGATATTGTACTCCATGGTTGCTTTC 649
|| | || || ||| | || || | | ||||| ||||| ||||||||||||| |||||
Sbjct 436 -TACT-TCCTC-CCG--GAGTATCGAGGTGTATCAGATATGGTACTCCATGGTTACTTTC 490
Query 650 TTTACATCGGT--GT-TGGTGATTACATTCAAATCATCGATTTGTCTAAAGACCAAGGTT 706
|||| |||| | | | ||| |||||||| | || | |||||||||||| | || |||
Sbjct 491 TTTATATCGCTACGCCTCGTGGTTACATTCGATTCCTTGATTTGTCTAAACAAGAACGTT 550
Query 707 TCAAGGATGTTACTCGAAATTATCTATTCAACGTGCAT-AATGGACCATGGGGTTTTCGA 765
|| |||| |||||| ||| ||| | ||| || || | ||| ||||| || | |
Sbjct 551 TCGAGGAGGTTACTGGAATTTACCCATTGAAA-TGGTTTAAT---CCATGTTATTATAAA 606
Query 766 AGTATTTTTAACCTTGTGGTTACAACATCAGGAGAGGTTTTGATGGTTCTA-AACAATCT 824
| | || || | |||||||||||||| ||||||||||||| ||| ||| | ||||| ||
Sbjct 607 ACCAATTGTAGCATTGTGGTTACAACAGCAGGAGAGGTTTTAATG-TTCCAGAACAACCT 665
Query 825 TTACGAGAAAAATATTGAAAGCGAGAAGAGCTTCCG-CATCTTCAAGAA-GGATCCTAAT 882
| || ||||||| |||||||| || ||||||||||| | ||| |||| | || |||||||
Sbjct 666 TGACAAGAAAAACATTGAAAGTGATAAGAGCTTCCGAC-TCTACAAGCACGG-TCCTAAT 723
Query 883 CCAGACCCAAATAAACACGACAA-CTTGCTTGTTGAGGTAGATTCTCTAGGTA-ATGAAG 940
| | || || ||||| | |||||||||||||||||||||||| | ||||||
Sbjct 724 GAA-ATT-AATTACT-ACGACCCGCC-GCTTGTTGAGGTAGATTCTCTAGG-AGATGAAG 778
Query 941 AGGTTATGCTTCTTGACTTGGGTATCACTATGCATGGTATCGAACCAAACTCCAT 995
||| | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 AGGCTCTGCTTCTTGACTTGGGTATCACTATGCCTGGTATCGAACCAAACTCCAT 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5