BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14510.1
Length=2607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931165 jgi|Araly1|931165|scaffold_303622.1 268 1e-70
Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459 185 1e-45
> Ahg931165 jgi|Araly1|931165|scaffold_303622.1
Length=351
Score = 268 bits (145), Expect = 1e-70
Identities = 180/196 (92%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 438 TGTCGAGGAGATCGTTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTCAAAAC 497
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 104 TGTCGAGGAGATCATTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTAAAAAC 163
Query 498 AGGGACAAGTACACCAATGATATCAGCCATAGAACTAAGACCTTTGCGATATGATACTTA 557
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 164 AGGGACGAGTACACCAATGATATCAGCCATAGAACTACGACCTATGCGATATGATACTTA 223
Query 558 TACTGCTCGAACCGGTTCCTTAAAGAGTAT-G-GCGCACTTCTACTTCACCAATTCAGAC 615
||||||||||||||| |||||||||| ||| | |||||| ||||||| |||||||||||
Sbjct 224 TACTGCTCGAACCGGATCCTTAAAGATTATTGAGCGCAC--CTACTTCGCCAATTCAGAC 281
Query 616 GAGGC-AATACGTTAT 630
|| | |||||| |||
Sbjct 282 AAG-CTAATACGGTAT 296
Score = 119 bits (64), Expect = 1e-25
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1 ATGGAGACTCGTAACAAGTTTATGCTACTCGCTTGTGCCACTTTCTCCATTATGTCTCTT 60
||||||| || ||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 21 ATGGAGAATCTTAACAAGCTTCTGCTACTCGCTTGTGCCACTTTCTCCGTTATGTCTCTT 80
Query 61 GTTAAGTCTCAAAATCAACAAG 82
|||||||||||||||||| |||
Sbjct 81 GTTAAGTCTCAAAATCAAGAAG 102
> Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459
Length=1185
Score = 185 bits (100), Expect = 1e-45
Identities = 436/593 (74%), Gaps = 44/593 (7%)
Strand=Plus/Plus
Query 1640 AAATGAAAAATAGAAGATTTAAGTATTCAGAGGTCAAAGAAATGACTAACAACTT-TGAA 1698
||| ||| || || || |||| ||||||||||||| || ||||| || ||||| ||
Sbjct 602 AAACGAATAAGAGGAGGTTTACTTATTCAGAGGTCACTGATATGACAAAAAACTTCCAAA 661
Query 1699 GTTGTTCTCGGTAAAGGAGGCTTTGGTGTTGTTTATCATGGTTTTCTCAAT---AATGAA 1755
| ||| | || ||||||| || ||| |||| ||||| ||| ||| ||| |||| |
Sbjct 662 G-AGTTGTTGGGGAAGGAGGATTCGGTATTGTCTATCACGGTACTCTGAATGGAAATGCA 720
Query 1756 CAAGTAGCCGTCAAAGTTCTCTCTCAATCATCAACTCAAGGCTACAAGGAATTCAAAACA 1815
|||||||| || ||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 721 CAAGTAGCTGTTAAAGTACTCTCTCAATCATCAACTCAAGGCTACAAGCAATTCAAGGCA 780
Query 1816 GAAGTC-G---AAC-T------A-CTTCTA---AGAGTTCACCATGTGAATTTAGTAAGC 1860
||||| | || | | ||||| |||||||||||| ||||| || |||
Sbjct 781 GAAGTATGCTTAAAATTTGTTGATCTTCTTCTGAGAGTTCACCATACAAATTTGGTGAGC 840
Query 1861 CTTGTCGGATACTGTGATGAAGGA-ATTGACTTGGCTCTCATCTACGAGTTCATGGAAAA 1919
|| || ||||| |||| |||||| || |||||||||| ||||||||||| || ||
Sbjct 841 CTCGTTGGATATTGTGGCGAAGGAGATC-ACTTGGCTCTTATCTACGAGTTTGTGCCCAA 899
Query 1920 TGGAAACTTAA-AGGAGCATCTTTCGGGAAAACGTGGTGGCTCTGTCTTGAATTGGTCG- 1977
||||||||||| | | ||||| || |||| ||| || || | | | ||| |
Sbjct 900 TGGAAACTTAAGACAA-CATCTGTCAGGAACACGAGGCATATCCAACATCAGCTGGG-GT 957
Query 1978 AGTAGACTTAA-AATAGCTATTG-AGTCTGCACTAGGAATTG-AGTACTTGCATAT-TGG 2033
| | |||| | ||||||| ||| || ||||||||||| ||| | || || ||| | |||
Sbjct 958 ATTCGACT-ACGAATAGCT-TTGGAGGCTGCACTAGGA-TTGGAATATTTACAT-TCTGG 1013
Query 2034 ATGT-CAGCCGCCAATGGTACATAGAGATGTAAAAAGTACCAATATACTGTTAGGTCTA- 2091
||| || || |||||| | || || ||||| |||| ||| || ||| |||| || | |
Sbjct 1014 ATGCACA-CCACCAATGATTCACAGGGATGTCAAAACTACAAACATATTGTT-GGACGAG 1071
Query 2092 CGGTT-TGAAG-CCAAACTTGCCGATTTCGGACTTTCAAGATCTTTTCTAGTGGGAAGTC 2149
| || | ||| ||||||| || ||||| || || ||||| ||||| | ||| ||| ||
Sbjct 1072 CA-TTAT-AAGGCCAAACTCGCTGATTTTGGGCTCTCAAGGTCTTTCCCAGTTGGAGGTG 1129
Query 2150 AAGCTCATGTATCAACAAATG-TTGCTGGAACTCTTGGATATCTTGATCCCGA 2201
|| ||||||| || || || ||||||| |||| ||| || |||||||||||
Sbjct 1130 AATCTCATGTTTCGACGG-TGATTGCTGGTACTCCTGGTTACCTTGATCCCGA 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98310922345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5