BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14520.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480346 jgi|Araly1|480346|fgenesh2_kg.3__3047__AT2G14520.1 2025 0.0
Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1 1173 0.0
> Ahg480346 jgi|Araly1|480346|fgenesh2_kg.3__3047__AT2G14520.1
Length=1441
Score = 2025 bits (1096), Expect = 0.0
Identities = 1342/1454 (92%), Gaps = 44/1454 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGTGGAATATGAATGCTGCGGGACCAG-CTTCTTCATACACATCGCTGTGATAGT 59
|||||||||||||||||||| ||||||| | | |||||| ||||| |||| |||||||||
Sbjct 1 ATGGCGGTGGAATATGAATGTTGCGGGA-CGGACTTCTTTATACATATCGGTGTGATAGT 59
Query 60 GTTACTAGTCTTGTTCGCTGGACTAATGTCTGGTCTTACTTTGGGTCTTATGTCTATGAG 119
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 GTTACTAGTGTTGTTCGCTGGACTAATGTCCGGTCTTACTTTGGGTCTTATGTCTATGAG 119
Query 120 TCTCGTTGATCTTGAGGTTCTTGCTAAATCCGGTACTCCCAGAGATCGTATCCATGCTGC 179
||||||||||||||| |||||| ||||||||||||| |||||||||||| | |||||||
Sbjct 120 TCTCGTTGATCTTGAAGTTCTTACTAAATCCGGTACACCCAGAGATCGTCTTCATGCTGA 179
Query 180 AAAGATTTTACCAGTTGTGAAAAATCAGCATCTTTTGCTTTGTACTTTACTGATATGTAA 239
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGATATTGCCGGTTGTGAAAAATCAGCATCTTTTGCTTTGTACTTTACTGATATGTAA 239
Query 240 TGCAGCTGCTATGGAGGCGCTTCCTATATTTCTTGATGCTCTTGTGACGGCTTGGGGTGC 299
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 TGCAGCTGCTATGGAGACGCTTCCTATATTCCTTGATGCTCTTGTGACGGCTTGGGGTGC 299
Query 300 CATTTTGATTTCAGTGACGCTAATTCTTCTCTTTGGTGAGATCATACCTCAGTCAGTCTG 359
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 300 CATTTTGATTTCAGTGACGTTAATTCTTTTCTTTGGTGAGATCATACCTCAGTCAGTTTG 359
Query 360 TTCTCGTCATGGTTTAGCTATTGGTGCAACAGTGGCTCCATTTGTTCGTGTTCTAGTTTG 419
||| | |||||| || || |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 360 TTCCCATCATGGGTTGGCGATTGGTGCAACAATGGCTCCATTTGTTCGTGTTCTAGTCTG 419
Query 420 GATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTAGACTTTCTACTTGGTCATGG 479
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 420 GATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTGGACTTTCTACTGGGTCATGG 479
Query 480 TCGTGTAGCTCTTTTCCGAAGAGCTGAGCTGAAAACACTTGTGGATTTGCATGGAAAT-- 537
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 TCGTGTAGCCCTTTTCCGAAGAGCTGAGCTTAAAACACTTGTGGATTTGCATGGAAATGA 539
Query 538 -G------------------AGGCTGGTAAAGGTGGAGAATTGACACATGATGAAACAAC 578
| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 540 GGCATCATTCAAATTCTTTCAGGCTGGTAAGGGTGGAGAGTTGACACATGATGAAACAAC 599
Query 579 AATCATTGCTGGAGCTCTTGAACTATCTGAGAAAATGGCTAAAGATGCAATGACACCAAT 638
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 AATCATTGCCGGAGCTCTTGAACTATCTGGGAAAATGGCTAAAGATGCAATGACACCAAT 659
Query 639 TTCTGACACTTTTGTGATTGATATCAATGCCAAACTAGACAGGGATTTGATGAATTTGAT 698
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TTCTGACACTTTTGTGATTGATATCAATGCCAAACTAGACAGGGAATTGATGAATTTGAT 719
Query 699 TCTTGATAAAGGTCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGG 758
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTTGAGAAAGGTCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGG 779
Query 759 ACTTGTTTTGGTGAAGAACTTATTGACTATCAATCCAGATGAAGAAATACAAGTAAAAAA 818
|||||||||||| ||||||||| | |||||||| |||||||| ||||||||||| || ||
Sbjct 780 ACTTGTTTTGGTAAAGAACTTACTAACTATCAACCCAGATGATGAAATACAAGTCAAGAA 839
Query 819 TGTGACTATACGAAGAATCCCAAGAGTTCCAGAAACGTTACCGTTATATGATATATTAAA 878
|||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 840 TGTGACAATACGAAGGATTCCAAGAGTTCCAGAAACCTTACCGTTATATGATATATTGAA 899
Query 879 CGAGTTCCAGAAAGGACATAGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCA 938
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGAATTCCAGAAAGGACATAGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCA 959
Query 939 CCCGTTACAGAGTAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGA 998
||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CCCATTACACAATAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGA 1019
Query 999 TTATGAGAGATCCCCACAGGAAACGAAGTTAAAGAGAAGGAGATCA-TTACAGAAATGGA 1057
| |||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||
Sbjct 1020 TAATGAGAGATCCCCACAGGAAACAAAGTTAAAGAGAAGGACATCACTT-CAGAAATGGA 1078
Query 1058 AGAGCTTTCCAAACCGAGCAAATTCG-TT-----AGGGTCGAGGAGCAAGAGGTGGTCCA 1111
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1079 AGAGCTTTCCAAACCGAGCAAATTCGTTTAAAGCAGGGTCGAGGAGCAAGAGGTGGTCCA 1138
Query 1112 AAGATAATGATGCTGATATTCTGCAACTTAACGAACATCCACTTCCAAAGCTAGATGAGG 1171
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGATAATGATACTGACATTCTGCAACTTAACGAACATCCACTTCCAAAGCTAGATGAGG 1198
Query 1172 AGGAAGATGCTGTTGGTATCATTACAATGGAAGATGTCATTGAAGAACTTTTACAGGAAG 1231
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1199 AGGAAGATGCTGTTGGTATCATTACCATGGAAGATGTCATTGAAGAACTTTTACAGGAAG 1258
Query 1232 AGATATTCGATGAGACGGATCATCATTTTGAAGACTTGTGACAGGCCACAACTTCGAGTG 1291
|||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1259 AGATATTCGATGAGACGGATCATCATTTTGAAGACTTGTGACAG--------T-CGAGTG 1309
Query 1292 CTTAATATTAGTTGTTTGAACCATGTACATGGTGCTATATACCTCAGAAGATCCAATTTC 1351
|| |||||||||||| || ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1310 CTCAATATTAGTTGTCTGGACCATATACATGGTGCTATA--CCTCAGAAGATCCAATTTC 1367
Query 1352 CACTGGACAAGTTTTGTTGCGAAAGAGTCATGTATA-A-AAGTAAGATCATATGTCATGT 1409
|||||||||||||||| |||||||||||| | |||| | |||| ||||||||||||||||
Sbjct 1368 CACTGGACAAGTTTTGCTGCGAAAGAGTCGTATATATACAAGTCAGATCATATGTCATGT 1427
Query 1410 AATAACACTGCTTC 1423
||||||||||||||
Sbjct 1428 AATAACACTGCTTC 1441
> Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1
Length=1668
Score = 1173 bits (635), Expect = 0.0
Identities = 1087/1298 (84%), Gaps = 59/1298 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGTGGAATATGAATGCTGCGGGACC-AGCTTCTTCATACACATCGCTGTGATAGT 59
||||||||||| |||| ||| ||| | || | |||||||||||| || |||||||| ||
Sbjct 253 ATGGCGGTGGAGTATGTATGTTGC-AGCCCAAACTTCTTCATACATATAGCTGTGATTGT 311
Query 60 GTTACTAGTCTTGTTCGCTGGACTAATGTCTGGTCTT-ACTTTGGGTCTTATGTCTATGA 118
||| || ||||||||||||||||| ||||||||| || || ||||||||||||||| |||
Sbjct 312 GTTTCTTGTCTTGTTCGCTGGACTTATGTCTGGT-TTAACATTGGGTCTTATGTCTCTGA 370
Query 119 GTCTCGTTGATCTTGAGGTTCTTGCTAAATCCGGTACTCCCAG-AGATCGTATCCATGCT 177
|||||||||||||||| ||||| |||||||| ||||| ||| | | |||||| |||||
Sbjct 371 GTCTCGTTGATCTTGAAGTTCTCGCTAAATCGGGTACACCC-GAACATCGTAAATATGCT 429
Query 178 GCAAAGATTTTACCAGTTGTGAAAAATCAGCATCTTTTGCTTTGT-ACTTTACTGATATG 236
|||||||| || ||||| ||||| ||||||||||| |||| |||| |||||||| |||||
Sbjct 430 GCAAAGATATTGCCAGTGGTGAAGAATCAGCATCTGTTGC-TTGTCACTTTACTTATATG 488
Query 237 TAATGCAGCTGCTATGGAGGCGCTTCCTATATTTCTTGAT-GCTCTTGTGACGGCTTGGG 295
|| ||||||||||||||| |||| ||||| ||||||||| || ||||||||||| ||||
Sbjct 489 CAACGCAGCTGCTATGGAGACGCTCCCTATTTTTCTTGATGGC-CTTGTGACGGCATGGG 547
Query 296 GTGCCATTTTGATTTCAGTGACGCTAATTCTTCTCTTTGGTGAGATCATACCTCAGTCAG 355
||||||||||||||||||| || | |||||||||||||||||||| ||||| ||||||
Sbjct 548 GTGCCATTTTGATTTCAGTTACATTGATTCTTCTCTTTGGTGAGATTATACCGCAGTCAA 607
Query 356 TCTGTTCTCGTC-ATGGTTTAGCTATTGGTGCAACAGTGGCTCCATTTGTTCGTGTTCTA 414
| || || || | ||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct 608 TTTGCTCACG-CTATGGTTTGGCGATTGGTGCAACAGTGGCTCCGTTTGTTCGTGTCCTA 666
Query 415 GT-TTGGATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTAGACTTTCTACTT-G 472
|| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||| || |
Sbjct 667 GTCTT-TATCTGCTTACCTGTTGCATGGCCAATTAGCAAGCTGCTGGACTTTCTA-TTGG 724
Query 473 GTCATGGTCGTGTAGCTCTTTTCCGAAGAGCTGAGCTGAAAACACTTGTGGATTTGCATG 532
||||| | || | ||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 725 GTCATCGCCGAGCAGCACTTTTTCGAAGAGCTGAGCTGAAAACACTTGTGGATTTTCATG 784
Query 533 GAAATGAGGCTGGTAAAGGTGGAGAATTGACACATGATGAAACAACAATCATTGCTGGAG 592
||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| || ||||
Sbjct 785 GAAATGAGGCTGGGAAAGGTGGAGAGTTGACTCATGATGAAACGACAATCATCGCAGGAG 844
Query 593 CTCTTGAACTATCTGAGAAAATGGCTAAAG-ATGCAATGACACCAATTTCTGACA-CTTT 650
|||| ||||| ||||||||||||| | ||| |||||||||||||||| ||||| | ||||
Sbjct 845 CTCTCGAACTGTCTGAGAAAATGG-TCAAGGATGCAATGACACCAATATCTGATATCTTT 903
Query 651 TGTGATTGATATCAATGCCAAACTAGACAGGGATTTGATGAATTTGATTCTTGATAAAGG 710
||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||
Sbjct 904 -GTGATTGATATCAATGCCAAACTAGACAGAGACTTGATGAACTTGATTCTTGAGAAAGG 962
Query 711 TCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGGACTTGTTTTGGT 770
||||||||||| ||||||||||||||||| | || |||||||| || |||||| ||||
Sbjct 963 GCATAGCAGAGTTCCAGTATACTATGAGCAGCCAACTAACATAATCGGCCTTGTTCTGGT 1022
Query 771 GAAGAACTTATTGACTATCAATCCAGATGAAGAAATACAAGTAAAAAATGTGACTATACG 830
|||||||||||||||||||| |||||||||||||||| || || ||||| || ||| |
Sbjct 1023 AAAGAACTTATTGACTATCAACCCAGATGAAGAAATACCTGTCAAGAATGTCACGATAAG 1082
Query 831 AAGAATCCCAAGAGTTCCAGAAA-CGTTACCGTTATATGATATATTAAACGAGTTCCAGA 889
||| || |||||||||||||||| | || || |||||||| ||||| ||||| |||||||
Sbjct 1083 AAGGATTCCAAGAGTTCCAGAAATC-TTGCCTTTATATGACATATTGAACGAATTCCAGA 1141
Query 890 AAGGACAT-AGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCACCCGTTACAG 948
|||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1142 AAGGAC-TCAGCCACATGGCTGTTGTTGTGAGACAGTGCGACAAAATCCACCCATTACCT 1200
Query 949 AGTAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGATTA-TGAGAG 1007
||| ||| | ||| ||| || |||| | |||||||||||||| | |||| |
Sbjct 1201 TCTAAAAATG--G-----GAG--TGTTAAGGAAGCCCGAGTGGATGTGGAT-AGTGAGGG 1250
Query 1008 A--TCC--C-CA-CAGGAAACGAA-GTTAAAGA-GAAGGAGATCA-TTACAGAAA-TGGA 1057
| ||| | | ||||| | ||| ||||| || ||| ||||| || || ||| ||||
Sbjct 1251 AACTCCTACTCCTCAGGAGA-GAATGTTAAGGACGAAA-AGATCGCTT-CA-AAAGTGGA 1306
Query 1058 AGAGCTTTCCAAACCGAGCAAATTCGTT-A--GG-G--TCGAGGAGCAAGAGGTGGTCCA 1111
|||||||||| || |||||||||||||| | || | || | || ||||| |||||| |
Sbjct 1307 AGAGCTTTCCGAATCGAGCAAATTCGTTTAAAGGAGGGTCAAAGACCAAGAAGTGGTCAA 1366
Query 1112 AAGATAATGATGCTGATATTCTGCAACTTAACGAACA-TCCACTTCC-AAAGCTAGATGA 1169
|||| |||||| | || || |||||||| || | || ||| || || ||| || | |||
Sbjct 1367 AAGACAATGATACAGACATCCTGCAACTGAATGG-CAATCCGCTGCCTAAA-CTTGCTGA 1424
Query 1170 GGAGGAAGATGCTGTTGGTATCATTACAATGGAAGATGTCATTGAAGAACTTTTACAGGA 1229
||| ||||| ||||| || |||||||||||||| |||||||||||||||||| | |||||
Sbjct 1425 GGAAGAAGAAGCTGTCGGAATCATTACAATGGAGGATGTCATTGAAGAACTTCTGCAGGA 1484
Query 1230 AGAGATATTCGATGAGACGGATCATCATTTTGAAGACT 1267
|| || || || || || ||||| |||||||||||||
Sbjct 1485 GGAAATCTTTGACGAAACTGATCACCATTTTGAAGACT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5