BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G14530.1 Length=1545 Score E Sequences producing significant alignments: (Bits) Value Ahg480347 jgi|Araly1|480347|fgenesh2_kg.3__3048__AT2G14530.1 2194 0.0 > Ahg480347 jgi|Araly1|480347|fgenesh2_kg.3__3048__AT2G14530.1 Length=1509 Score = 2194 bits (1188), Expect = 0.0 Identities = 1396/1495 (93%), Gaps = 20/1495 (1%) Strand=Plus/Plus Query 19 CCAAAATCTCCGCCATGGCTGAGAGCTTCTGAGAGAGACACAGCCATGGCTACAACTTCA 78 |||||||||||||||||||| ||||||||| ||||| |||||||||||| | |||| Sbjct 1 CCAAAATCTCCGCCATGGCTAAGAGCTTCT--GAGAG----AGCCATGGCTACGATTTCA 54 Query 79 CACAACAAACcctcactcttccctctactctcccttctctgtttcatctccattttcctc 138 | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 55 CCCAACAAACTCTCAATCTTCCCTCTACTCTCCCTTCTCTGTTTCATCTCCATTTTCTTC 114 Query 139 ctcctctctctatccaaacgcgcttccctctcctctcccaaaactcaccgctccGCCACC 198 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 115 CTCCTCTCTCTATCCAAACGCGCTTCTCTCTCCTCTCCCAACACTCACCGCTCCGCCACC 174 Query 199 GTCTTCCCTCCAAAACCCGACGGTTCCCTCTCACCTCTCTCCGCCACTTGCGACTTCTCC 258 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GTCTTCCCTCCAAAATCCGACGGTTCCCTCTCACCTCTCTCCGCCACTTGCGACTTCTCC 234 Query 259 GAAGGCTCCTGGATCTACGACCCCAACCCCAGATCCACCAGGTACACCAGTAGTTGTAAA 318 || ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 235 GACGGCTCATGGATCTACGACCCCAACCCCAGATCCACCAGGTACACTAGTAATTGTAAA 294 Query 319 GAAATCTTCAAAGGATGGAATTGTATTCGTAACAACAAAACCAATGGTTTCGAGATATCT 378 || |||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct 295 GAGATCTTCAAAGGATGGAATTGCATTCGTAACAACAAAACCAATGGTCTCGAGATCTCT 354 Query 379 AATTGGCGATGGAAACCTAAACACTGTGATCTTCCTTCGTTTGATCCACTCAAATTTCTT 438 || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 355 AAATGGCGATGGAAGCCTAAGGACTGTGATCTTCCTTCGTTTGATCCACTCAAATTTCTT 414 Query 439 CAGTCTCATCGCAATACCAACATCGGATTTGTGGGTGATTCATTGAATAGGAACATGTTT 498 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CAGACTCATCGAAATACCAACATCGGATTTGTGGGTGATTCATTGAATAGGAACATGTTT 474 Query 499 GTATCTTTATTCTGTATGTTAAAGAGTGTGACGGGTGAATTGAAGAAGTGGCGACCTGCC 558 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 475 GTATCTTTATTCTGTATGTTAAAGAGTGTGACGGGTGAACTGAAGAAGTGGCGACCAGCG 534 Query 559 GGTGCAGATCGCGGATTCACGTTTTCGCAGTATAATTTGACTATCGCGTATCATCGAACA 618 ||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||| Sbjct 535 GGTGCAGATCGCGGATTTACGTTTTTGCAGTATAATCTGACTATAGCGTATCATCGAACA 594 Query 619 AATCTATTGGCTCGTTATGGTAGATGGTCAGCCAATGCTAAGGGTGGTGAGTTAGAATCT 678 ||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||| Sbjct 595 AATCTCTTGGCTCGTTATGGTAGGTGGTCAGCTAATGCCAATGGTGGTGAGTTAGAATCT 654 Query 679 CTTGGATTTAAAGAGGGCTATAGAGTTGATGTTGATATTCCAGACAGCTCGTGGGCGAAG 738 |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 655 CTTGGATTTAAAGAGGGCTATAGAGTTGATGTCGATATTCCAGACAGCTCATGGGAAAAG 714 Query 739 GCTTCGAGTTTCCATGACATTCTCATTTTGAACACTGGGCATTGGTGGTGGGCGCCATCA 798 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 715 GCTTCGAGTTTCCATGACATTCTCATTTTAAACACTGGGCATTGGTGGTGGGCGCCATCA 774 Query 799 AAATTTGACCCTGTAAAATCTCCTATGCTTTTCTTTGAAGGCGGTCGGCCAATACTTCCA 858 |||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 775 AAATTTGACCCTCTAAAATCTCCTATGCTATTCTTTGAAGGTGGCCGGCCAATACTTCCA 834 Query 859 CCTATACCTCCTGCTACTGGCCTAGACCGGGTTCTAAACAATATGGTAAATTTTGTGGAG 918 || |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 835 CCAATACCTCCTGCTGCTGGCCTGGATCGGGTTCTAAACAATATGGTAAATTTTGTGGAG 894 Query 919 AAAACAAAGCGACCTGGAGGGATCATATTCTTCCGGACACAATCACCTAGGCACTTTGAA 978 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 895 AAAACAAAGCGACCTGGAGGGATCATATTCTTCCGAACACAATCACCTAGGCACTTTGAA 954 Query 979 GGAGGTGACTGGGACCAAGGTGGTACTTGTCAACGACTGCAACCTTTGTTACCTGGAAAA 1038 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 955 GGAGGTGACTGGAACCAAGGTGGTACTTGTCAAAGACTGCAACCTTTGTTACCTGGACAA 1014 Query 1039 GTTGAGGAATTTTTCTCAGTGGGGAACAACGGAACAAATGTAGAGGTTCGTCTCGTGAAT 1098 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1015 GTTGAAGAATTGTTCTCAGTGGGGAACAACGGAACAAATGTAGAGGTTCGTCTGGTGAAT 1074 Query 1099 CAACACCTCTATAACTCCCTCAAGAGTAGAAGCGCCTTCCACGTTTTGGACATAACTCGA 1158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 CAACACCTCTATAACTCCCTCAAGAGTAGAAGCGCCTTCCACGTTTTGGACATAACTCGA 1134 Query 1159 ATGAGCGAGTACAGAGCCGACGCTCATCCGGCAGCAGCTGGTGGAAAGAATCACGATGAC 1218 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1135 ATGAGCGAGTACAGAGCTGACGCTCATCCAGCAGCAGCTGGTGGAAAGAATCACGATGAC 1194 Query 1219 TGCATGCATTGGTGCCTCCCGGGCCTTACCGACACTTGGAATGATTTATTCGTTGCAACT 1278 ||||||||||||||||| |||||| | |||||||||||||||||||||||| | |||||| Sbjct 1195 TGCATGCATTGGTGCCTTCCGGGCATCACCGACACTTGGAATGATTTATTCATCGCAACT 1254 Query 1279 CTTCATACGATCAAAGCTTT-GTAACCTGAAG-AA---TCACACCCGTCTTTAGAATGGT 1333 || ||||||||||||| | ||||||||||| || ||||||||||||||| ||| || Sbjct 1255 CTCCATACGATCAAAGGATAAGTAACCTGAAGGAAGAATCACACCCGTCTTTATAATTGT 1314 Query 1334 T---ACTC-TTGGGTCTAGCGTCATAGTCATTTTATTTCTTTTTGTACTCTTGTAAATTT 1389 | | || ||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1315 TTTGATTCGTTGGGTCTAGCGTCA--GTCATTTT-TTTCTTTTTGTACTCTTGTAAATTT 1371 Query 1390 TGATGTTATCTTCTGCGAtttttttttgtttagttattttttggcctacagtattcaaaa 1449 ||||||||||||||||| | |||||| |||||||||||||||| ||||||||| ||||| Sbjct 1372 TGATGTTATCTTCTGCG-TATTTTTTAATTTAGTTATTTTTTGGTCTACAGTATGCAAAA 1430 Query 1450 gtgtttttaatattacatgcacttttcattttattttttttGGTCAAACACTTTT 1504 ||||||| ||||||| || ||||||||||||||| ||||| |||||||||||||| Sbjct 1431 GTGTTTTAAATATTATATACACTTTTCATTTTATCTTTTT-GGTCAAACACTTTT 1484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57859082155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5