BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14530.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480347 jgi|Araly1|480347|fgenesh2_kg.3__3048__AT2G14530.1 2194 0.0
> Ahg480347 jgi|Araly1|480347|fgenesh2_kg.3__3048__AT2G14530.1
Length=1509
Score = 2194 bits (1188), Expect = 0.0
Identities = 1396/1495 (93%), Gaps = 20/1495 (1%)
Strand=Plus/Plus
Query 19 CCAAAATCTCCGCCATGGCTGAGAGCTTCTGAGAGAGACACAGCCATGGCTACAACTTCA 78
|||||||||||||||||||| ||||||||| ||||| |||||||||||| | ||||
Sbjct 1 CCAAAATCTCCGCCATGGCTAAGAGCTTCT--GAGAG----AGCCATGGCTACGATTTCA 54
Query 79 CACAACAAACcctcactcttccctctactctcccttctctgtttcatctccattttcctc 138
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 55 CCCAACAAACTCTCAATCTTCCCTCTACTCTCCCTTCTCTGTTTCATCTCCATTTTCTTC 114
Query 139 ctcctctctctatccaaacgcgcttccctctcctctcccaaaactcaccgctccGCCACC 198
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 115 CTCCTCTCTCTATCCAAACGCGCTTCTCTCTCCTCTCCCAACACTCACCGCTCCGCCACC 174
Query 199 GTCTTCCCTCCAAAACCCGACGGTTCCCTCTCACCTCTCTCCGCCACTTGCGACTTCTCC 258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTCTTCCCTCCAAAATCCGACGGTTCCCTCTCACCTCTCTCCGCCACTTGCGACTTCTCC 234
Query 259 GAAGGCTCCTGGATCTACGACCCCAACCCCAGATCCACCAGGTACACCAGTAGTTGTAAA 318
|| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 235 GACGGCTCATGGATCTACGACCCCAACCCCAGATCCACCAGGTACACTAGTAATTGTAAA 294
Query 319 GAAATCTTCAAAGGATGGAATTGTATTCGTAACAACAAAACCAATGGTTTCGAGATATCT 378
|| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 295 GAGATCTTCAAAGGATGGAATTGCATTCGTAACAACAAAACCAATGGTCTCGAGATCTCT 354
Query 379 AATTGGCGATGGAAACCTAAACACTGTGATCTTCCTTCGTTTGATCCACTCAAATTTCTT 438
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAATGGCGATGGAAGCCTAAGGACTGTGATCTTCCTTCGTTTGATCCACTCAAATTTCTT 414
Query 439 CAGTCTCATCGCAATACCAACATCGGATTTGTGGGTGATTCATTGAATAGGAACATGTTT 498
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CAGACTCATCGAAATACCAACATCGGATTTGTGGGTGATTCATTGAATAGGAACATGTTT 474
Query 499 GTATCTTTATTCTGTATGTTAAAGAGTGTGACGGGTGAATTGAAGAAGTGGCGACCTGCC 558
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 475 GTATCTTTATTCTGTATGTTAAAGAGTGTGACGGGTGAACTGAAGAAGTGGCGACCAGCG 534
Query 559 GGTGCAGATCGCGGATTCACGTTTTCGCAGTATAATTTGACTATCGCGTATCATCGAACA 618
||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 535 GGTGCAGATCGCGGATTTACGTTTTTGCAGTATAATCTGACTATAGCGTATCATCGAACA 594
Query 619 AATCTATTGGCTCGTTATGGTAGATGGTCAGCCAATGCTAAGGGTGGTGAGTTAGAATCT 678
||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct 595 AATCTCTTGGCTCGTTATGGTAGGTGGTCAGCTAATGCCAATGGTGGTGAGTTAGAATCT 654
Query 679 CTTGGATTTAAAGAGGGCTATAGAGTTGATGTTGATATTCCAGACAGCTCGTGGGCGAAG 738
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 655 CTTGGATTTAAAGAGGGCTATAGAGTTGATGTCGATATTCCAGACAGCTCATGGGAAAAG 714
Query 739 GCTTCGAGTTTCCATGACATTCTCATTTTGAACACTGGGCATTGGTGGTGGGCGCCATCA 798
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 715 GCTTCGAGTTTCCATGACATTCTCATTTTAAACACTGGGCATTGGTGGTGGGCGCCATCA 774
Query 799 AAATTTGACCCTGTAAAATCTCCTATGCTTTTCTTTGAAGGCGGTCGGCCAATACTTCCA 858
|||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 775 AAATTTGACCCTCTAAAATCTCCTATGCTATTCTTTGAAGGTGGCCGGCCAATACTTCCA 834
Query 859 CCTATACCTCCTGCTACTGGCCTAGACCGGGTTCTAAACAATATGGTAAATTTTGTGGAG 918
|| |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 835 CCAATACCTCCTGCTGCTGGCCTGGATCGGGTTCTAAACAATATGGTAAATTTTGTGGAG 894
Query 919 AAAACAAAGCGACCTGGAGGGATCATATTCTTCCGGACACAATCACCTAGGCACTTTGAA 978
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 895 AAAACAAAGCGACCTGGAGGGATCATATTCTTCCGAACACAATCACCTAGGCACTTTGAA 954
Query 979 GGAGGTGACTGGGACCAAGGTGGTACTTGTCAACGACTGCAACCTTTGTTACCTGGAAAA 1038
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 955 GGAGGTGACTGGAACCAAGGTGGTACTTGTCAAAGACTGCAACCTTTGTTACCTGGACAA 1014
Query 1039 GTTGAGGAATTTTTCTCAGTGGGGAACAACGGAACAAATGTAGAGGTTCGTCTCGTGAAT 1098
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 GTTGAAGAATTGTTCTCAGTGGGGAACAACGGAACAAATGTAGAGGTTCGTCTGGTGAAT 1074
Query 1099 CAACACCTCTATAACTCCCTCAAGAGTAGAAGCGCCTTCCACGTTTTGGACATAACTCGA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAACACCTCTATAACTCCCTCAAGAGTAGAAGCGCCTTCCACGTTTTGGACATAACTCGA 1134
Query 1159 ATGAGCGAGTACAGAGCCGACGCTCATCCGGCAGCAGCTGGTGGAAAGAATCACGATGAC 1218
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1135 ATGAGCGAGTACAGAGCTGACGCTCATCCAGCAGCAGCTGGTGGAAAGAATCACGATGAC 1194
Query 1219 TGCATGCATTGGTGCCTCCCGGGCCTTACCGACACTTGGAATGATTTATTCGTTGCAACT 1278
||||||||||||||||| |||||| | |||||||||||||||||||||||| | ||||||
Sbjct 1195 TGCATGCATTGGTGCCTTCCGGGCATCACCGACACTTGGAATGATTTATTCATCGCAACT 1254
Query 1279 CTTCATACGATCAAAGCTTT-GTAACCTGAAG-AA---TCACACCCGTCTTTAGAATGGT 1333
|| ||||||||||||| | ||||||||||| || ||||||||||||||| ||| ||
Sbjct 1255 CTCCATACGATCAAAGGATAAGTAACCTGAAGGAAGAATCACACCCGTCTTTATAATTGT 1314
Query 1334 T---ACTC-TTGGGTCTAGCGTCATAGTCATTTTATTTCTTTTTGTACTCTTGTAAATTT 1389
| | || ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1315 TTTGATTCGTTGGGTCTAGCGTCA--GTCATTTT-TTTCTTTTTGTACTCTTGTAAATTT 1371
Query 1390 TGATGTTATCTTCTGCGAtttttttttgtttagttattttttggcctacagtattcaaaa 1449
||||||||||||||||| | |||||| |||||||||||||||| ||||||||| |||||
Sbjct 1372 TGATGTTATCTTCTGCG-TATTTTTTAATTTAGTTATTTTTTGGTCTACAGTATGCAAAA 1430
Query 1450 gtgtttttaatattacatgcacttttcattttattttttttGGTCAAACACTTTT 1504
||||||| ||||||| || ||||||||||||||| ||||| ||||||||||||||
Sbjct 1431 GTGTTTTAAATATTATATACACTTTTCATTTTATCTTTTT-GGTCAAACACTTTT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5