BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14540.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1 1664 0.0
Ahg475127 jgi|Araly1|475127|fgenesh2_kg.2__257__AT1G62170.1 819 0.0
> Ahg480348 jgi|Araly1|480348|fgenesh2_kg.3__3049__AT2G14540.1
Length=1288
Score = 1664 bits (901), Expect = 0.0
Identities = 1142/1256 (91%), Gaps = 25/1256 (2%)
Strand=Plus/Plus
Query 31 AAAGAACCAAGAACTTAGCACATCAGAAACCGCAGATCCCTCTCTCTCAAAGACGAATAA 90
||| |||||||||||||||||||| |||| | ||||||||||||||||||| ||||| ||
Sbjct 1 AAA-AACCAAGAACTTAGCACATCGGAAATCACAGATCCCTCTCTCTCAAAAACGAAGAA 59
Query 91 AAAGCAAAAGATTG-ATATGCAAGAAGCGATGAAGAACCAAAACGAGGTTTCTCTGTTAC 149
||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 60 AAAGCAAAAGA-TGAATATGCAAGAAGCGATGAAGAACCAAAACGACGTTTCTATGTTCC 118
Query 150 TTGTGGGGAAAGTAATCTCTGCCGTAGCCAAAAACTCAAACTGTGTCTTCTCTCCGGCAT 209
||| |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||
Sbjct 119 TTGCAGGGAAAGTAATCTCTGCCGTCGCCAAAAACTCTAACTTTGTTTTCTCTCCGGCAT 178
Query 210 CCATCAACGCCGTTCTCACCGTGACCGCTGCCAACACCGACAACAAAACATTAAGATCTT 269
| |||||||||||||||||| |||| ||||||| | | |||| |||| |||||| ||| |
Sbjct 179 CGATCAACGCCGTTCTCACCATGACTGCTGCCACCTCTGACAGCAAATCATTAAAATCCT 238
Query 270 TCATCCTCTCTTTTCTTAAGTCTTCTTCTACCGAAGAGACCAACGCCATCTTCCACGAAC 329
|||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct 239 TCATCCTCTCCTTTCTTAGGTCTTCTTCCACCGAAGAGATCAACGCCATCTTCCACGAAC 298
Query 330 TCGCTTCCGTCGTCTTCAAAGACGGAAGTGAAACAGGCGGGCCCAAAATTGCGGCGGTTA 389
|||||||||||||| ||| ||||||||| |||| ||||||||| ||||| ||||||||||
Sbjct 299 TCGCTTCCGTCGTCCTCAGAGACGGAAGCGAAAGAGGCGGGCCTAAAATCGCGGCGGTTA 358
Query 390 ATGGAGTGTGGATGGAGCAATCGCTTTCGTGTAACCCCGACTGGGAAGATCTGTTTCTGA 449
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 359 ATGGTGTGTGGATGGAGCAATCGCTTTCGTGTAACCCCGACTGGGAAGATCTCTTTCAGA 418
Query 450 ACTTCTTCAAGGCTAGTTTCGCTAAAGTTGATTTCCGACACAAGGCTGAAGAAGTGCGTC 509
| || ||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 419 AGTTGTTCAAGGCTAGTTTCACTCAAGTTGATTTCCGAAACAAGGCTGAAGAAGTGCGTG 478
Query 510 TGGA-CGT--------AAATACGTGGGCTTCACGTCACACCAATGATCTCATCAAAGAAA 560
||| | | |||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 AGGAGCTTACACCAACAAATACGTGGGCTTCACGTCACACCAATGACCTCATCAAAGATC 538
Query 561 TTCTTCCTCGTGGATCTGTTACAAGCCTAACTAATTGGATATATGGAAACGCCTTGTACT 620
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TTCTTCCTTATGGATCTGTTACAAGCCTAACTAATTGGATATATGGAAACGCATTGTACT 598
Query 621 TCAAGGGAGCTTGGGAAAAGGCATTCGATAAGTCCATGACAAGAGATAAACCATTTCACC 680
||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||
Sbjct 599 TCAAGGGAGCTTGGGAAAAGGAATTTGATAAGTCCATGACAAAAGAGAAACCATTTCACC 658
Query 681 TTCTCAATGGCAAATCAGTCTCTGTGCCTTTCATGAGAAGCTATGAGAAACAATTCATAG 740
||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 659 TTCTCAATGACAAATCAGTCTCTGTGCCTTTCATGAGAAGCTACAAGAGGCAATTCATAG 718
Query 741 AGGCTTATGATGGTTTCAAAGTCCT-ACGCCTTCCTTATCGACAAGGACGTGATGATACC 799
||||||||||||||||||||||||| | | ||||||||||||||| | ||||||||||||
Sbjct 719 AGGCTTATGATGGTTTCAAAGTCCTCAAG-CTTCCTTATCGACAAAGCCGTGATGATACC 777
Query 800 AACCGCGAGTTTTCGATGTATCTCTATCTCCCTGACAAGAAAGGTGAACTGGATAATCTT 859
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 AACCGCAAGTTTTCCATGTATCTCTATCTCCCTGACAAGAAAGGTGAATTGGATAATCTT 837
Query 860 TTGGAGAGAATAACATCTAATCCTGGATTCTTGGATAGTCATATTCCGGAATACCGCGTT 919
||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 838 TTGGAGAGAATGACATCTACTCCTGGATTCTTGGATAGTCATATTCCGAAATACCGAGTT 897
Query 920 GATGTTGGTGATTTCAGAATTCCAAAATTTAAGATCGAATTCGGGTTTGAAGCTTCAAGT 979
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GATGTTGGTGATTTCAGAATTCCAAAATTTAAGATCGAATTCGGTTTTGAAGCTTCAAGT 957
Query 980 GTTTTTAATGAC-T-TT-GAGCTTAATGTGTCATTACACCAGAAAGCTTTGATTGAGATC 1036
|||||||||||| | || |||||||| ||||||||| | ||||||||||||||||||||
Sbjct 958 GTTTTTAATGACGTCTTTGAGCTTAAAGTGTCATTATATCAGAAAGCTTTGATTGAGATT 1017
Query 1037 GATGAAGAAGGTACTGAAGCTGCGGCTGCTACTACTGTTGTAGTA-GT--AACCGGCAGC 1093
||||||||||||||||||||||||||||||||| || |||| || || ||||||||||
Sbjct 1018 GATGAAGAAGGTACTGAAGCTGCGGCTGCTACTGCTTTTGTCGTGTGTTTAACCGGCAGC 1077
Query 1094 TGTTTGTGGGAGCCGAAGAAGAAGATAGATTTTGTGGCAGATCATCCATTTCTCTTTTTG 1153
||| || |||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 TGTGCGTTTGAGCCG--GA-GAAGATAGATTTTGTGGCAGAACATCCATTTCTCTTTTTG 1134
Query 1154 ATTAGAGAAGACAAAACCGGAACTCTTTTGTTCGCTGGTCAAATCTTCGATCCTTCTGAA 1213
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1135 ATTAGAGAAGACAAAACCGGAACTGTTTTGTTCGCTGGTCAAATCTTCGATCCTTCCGAA 1194
Query 1214 -CTTTCTTCTGCGTTGGACCGGGCTTAACCGGATAAGGGTTTGGTATTTTAGATTT 1268
||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1195 GCTT-CTTCTGCATTGGACCGGCCTTAACCGGATAGGGGTTTGGTATTTTAGATTT 1249
> Ahg475127 jgi|Araly1|475127|fgenesh2_kg.2__257__AT1G62170.1
Length=1296
Score = 819 bits (443), Expect = 0.0
Identities = 924/1149 (80%), Gaps = 61/1149 (5%)
Strand=Plus/Plus
Query 93 AGCAAAAGATTGATAT-GCAAGAAGCGATGAAGAACCAAAACGAGGTTTCTCTGTTACTT 151
||| ||| |||||| | | || |||| |||||||| |||||||| | || | || |||
Sbjct 174 AGC-AAATATTGATGTGGGAA-AAGCAATGAAGAAGCAAAACGATCTCGCTATATTCCTT 231
Query 152 GTGGGGAAAGTAATCTCTGCCGTAGCCAA-AA-ACTCAAACTGTGTCTTCTCTCCGGCAT 209
|||| |||||||||| |||||||||| || ||| || | |||||||||||| ||||
Sbjct 232 ACGGGGCTAGTAATCTCTTCCGTAGCCAATAATACT--AATTTTGTCTTCTCTCCTGCAT 289
Query 210 CCATCAACGCCGTTCTCACCGTGACCGCTGCCAACACC---GA-CAA-CAA--A-A-CAT 260
| |||||| |||| |||||| || ||||| | | || || || || | | |
Sbjct 290 CAATCAACACCGTACTCACCATGGTTGCTGCTAGCTCCAGTGATGAAGAAAGTAGAGAAC 349
Query 261 TAAGATCTTTCATCCTCTCTTTTCTTAAGTCTTCTTCTACCGAAGAGAC-CAACGCCA-T 318
||||||| |||||||| || || ||||||||||| || ||||| || || |||| || |
Sbjct 350 TAAGATCCTTCATCCTATCCTTCCTTAAGTCTTCCTCAACCGATGA-ACTTAACG-CAGT 407
Query 319 CTTCCA-CGAACTCGCTTCCGTCGT-CTTCAAAGACGGAAGTGAAACAGGCGGGCCCAAA 376
|| | |||| || ||||| ||| ||| || ||||| ||| |||||| ||||||
Sbjct 408 -TTTTAGCGAAATCTCTTCCACCGTCCTT-GTTGATGGAAGCAAAAAAGGCGGCCCCAAA 465
Query 377 ATTGCGGCGGTTAATGGAGTGTGGATGGAGCAATCGCT-TTCGTGTAACCCCGAC-TGGG 434
|| |||| ||||||||| || ||||||||| |||| || || | ||||||| | | |
Sbjct 466 ATCGCGGTGGTTAATGGTGTTTGGATGGAGAAATCTCTATTTAT-TAACCCC-TCGTCGA 523
Query 435 AAGATCTGTTTCTGAACTTCTTCAAGGCTAG-TTTCGCTAAAGTTGATTTCCGA-CACAA 492
||||||| ||| ||| |||||||||||| | ||||||| ||||||||||| || | |||
Sbjct 524 AAGATCTCTTTAAGAAGTTCTTCAAGGCT-GCTTTCGCTCAAGTTGATTTCAGATC-CAA 581
Query 493 GGCTGAAGAAGTGCGTCTGGACGTAAATACGTGGGCTTCACGTCACACCAATGATCTCAT 552
||| |||||||||| | |||| || ||| ||||||| ||| ||||||| |||| ||||||
Sbjct 582 GGCCGAAGAAGTGCTTATGGAGGTGAATGCGTGGGCATCAAGTCACACAAATGGTCTCAT 641
Query 553 CAAAGAAATTCTTCCTCGTGGATCTGTTACAAGCCTAACTAATTGGATATATGGAAACGC 612
|||||| |||||||||||||||| |||||||||||||| || |||| ||||||| | |
Sbjct 642 CAAAGATCTTCTTCCTCGTGGATCAGTTACAAGCCTAACCAACCGGATTTATGGAAGCAC 701
Query 613 CTTGTACTTCAAGGGAGCTTGGGAAAAGGCATTCGATAAGTCCATGACAAGAGATAAACC 672
||||||||||| ||||| ||| || | | |||| | ||||| ||||| ||| | |||||
Sbjct 702 ATTGTACTTCAAAGGAGCCTGGCAAGACGAATTCCACAAGTCAATGACGAGACACAAACC 761
Query 673 ATTTCACCTTCTCAATGGCAA-ATCAGTCTCTGTGCCTTTCATGAGAAGCTATG-AGAAA 730
||| ||||||||||||| || |||||| |||||||| |||||||| |||| || || |
Sbjct 762 TTTTTACCTTCTCAATGG-AACATCAGTGTCTGTGCCATTCATGAGTAGCTCTGAAG-AC 819
Query 731 CAATTCATAGAGGCTTATGATGGTTTCAAAGTCCTAC-GCCTTCCTTATCGACAAGGACG 789
|||| ||| |||||||||||||||||||| || || | | ||||||||||||||||| ||
Sbjct 820 CAATACATTGAGGCTTATGATGGTTTCAAGGTACT-CAGGCTTCCTTATCGACAAGGCCG 878
Query 790 TGATGATACCAACCGCGAGTTTTCGATGTATCTCTATCTCCCTGACAAGAAAGGTG-AAC 848
||| |||||||||||| | || || |||||| |||||||||||||||||||||| | ||
Sbjct 879 TGACGATACCAACCGCAACTTCTCAATGTATTTCTATCTCCCTGACAAGAAAGG-GCAAT 937
Query 849 TGGATAATCTTTTGGAGAGAATAACATCTAATCCTGGATTCTTGGATAGTCATATTCCGG 908
||||||| || |||| |||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 938 TGGATAAACTGTTGGGGAGAATGACATCTACTTCTGGATTCTTGGATAGTCATATTCCGG 997
Query 909 AATACCGCGTTGATGTTGGTGATTTCAGAATTCCAAAATTTAAGATCGAATTCGGGTTTG 968
|| || ||| | |||||| | |||||||||||||| |||||||||||||| |||||||
Sbjct 998 AAGACAAAGTTAAAGTTGGTAAATTCAGAATTCCAAAGTTTAAGATCGAATTTGGGTTTG 1057
Query 969 AAGCTTCAAGTGTTTTTAATGACTTTGAGCTTAATGTGTCATTACACCAGAAAGCTTTGA 1028
|||||||||||||||| | ||||||||||||| |||||||||| |||| ||||||||||
Sbjct 1058 AAGCTTCAAGTGTTTTCAGTGACTTTGAGCTTGATGTGTCATTGTACCAAAAAGCTTTGA 1117
Query 1029 TTGAGATCGATGAAGAAGGTACTGAAGCTGCGGCTGCTA-CTA-CTGTTGTA-G-TAGTA 1084
||||||||||||||||||||||||||||||| |||| || | | || |||| | | | |
Sbjct 1118 TTGAGATCGATGAAGAAGGTACTGAAGCTGCTGCTG-TAGC-AGCTTTTGTTCGAT-GCA 1174
Query 1085 ACCGGCAGCTGTTTGTGGGAGCCGAAGAAGAAGATAGATTTTGTGGCAGATCATCCATTT 1144
| ||| || |||| || || | || | |||||||||| ||||||||||| |||
Sbjct 1175 AA-GGCTGCCGTTT-TGTGA----A-GAC-AT--TAGATTTTGTAGCAGATCATCCGTTT 1224
Query 1145 CTCTTT-TTGATTAGAGAAGACAAAACCGGAACTCTTTTGTTCGCTGGTCAAATC-TTCG 1202
| ||| |||||||||||| || ||||||||||| ||||||||||||| |||||| || |
Sbjct 1225 GT-TTTCTTGATTAGAGAAAACCAAACCGGAACTGTTTTGTTCGCTGGCCAAATCCTT-G 1282
Query 1203 ATCCTTCTG 1211
|||||||||
Sbjct 1283 ATCCTTCTG 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5