BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14580.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906184 jgi|Araly1|906184|Al_scaffold_0003_3312 730 0.0
Ahg906183 jgi|Araly1|906183|Al_scaffold_0003_3311 684 0.0
> Ahg906184 jgi|Araly1|906184|Al_scaffold_0003_3312
Length=489
Score = 730 bits (395), Expect = 0.0
Identities = 457/487 (94%), Gaps = 3/487 (1%)
Strand=Plus/Plus
Query 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96
||||||||||| |||| |||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 1 ATGAAAGTCACTAGCTCCTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60
Query 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATTCTCACAACCAGGCA 120
Query 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216
||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 121 CGATCGCAGGTAGGCGTAGGCCCCTTGCAATGGGACGAGGGACTTGCAGCCTACGCTCGG 180
Query 217 AACTACGCAAACCAACTAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGGG 276
| ||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 181 AGCTACGCAAACCAACTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGCCCTTACGGG 240
Query 277 GAGAACTTGGCAAAGAGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGGTT 336
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 GAGAACTTGGCCAAGAGTGGCGGTGATTTGTCTGGTGTTGCTGCCGTGAATTTGTGGGTA 300
Query 337 AACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACTAC 396
||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 301 AACGAGAAGGCTAACTACAACTATAATACAAACACGTGCAATGGAGTTTGCGGACACTAC 360
Query 397 ACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACAA- 455
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 361 ACTCAGGTCGTTTGGAGAAATTCGGTGAGACTCGGATGTGCTAAAGTGAGGTGTAACAAT 420
Query 456 --TGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAG 513
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GGTGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAATTATGCGAACCAGAAG 480
Query 514 CCTTACT 520
|||||||
Sbjct 481 CCTTACT 487
> Ahg906183 jgi|Araly1|906183|Al_scaffold_0003_3311
Length=486
Score = 684 bits (370), Expect = 0.0
Identities = 448/486 (92%), Gaps = 4/486 (1%)
Strand=Plus/Plus
Query 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96
||||||||||| ||||| ||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 1 ATGAAAGTCACTAGCTATTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60
Query 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 120
Query 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216
|| |||||| |||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 121 CGGTCGCAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGG 180
Query 217 AACTACGCAAACCAAC-TAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGG 275
| ||||||| | ||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 181 AGCTACGCAGAG-AACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGG 239
Query 276 GGAGAACTTGGCAAAG-AGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGG 334
|||||||||||| | ||| |||||||||| ||||| || ||||| |||||||||||||
Sbjct 240 GGAGAACTTGGCCG-GTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGG 298
Query 335 TTAACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACT 394
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 299 TTAACGAGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACT 358
Query 395 ACACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACA 454
||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 359 ACACTCAAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACA 418
Query 455 ATGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAGC 514
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 ATGGTGGAACCATCATTAGTTGCAATTATAATCCTCCGGGGAACTATGCGAACCAGAAGC 478
Query 515 CTTACT 520
||||||
Sbjct 479 CTTACT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5