BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14610.1
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906183 jgi|Araly1|906183|Al_scaffold_0003_3311 527 5e-149
Ahg931178 jgi|Araly1|931178|scaffold_303635.1 394 5e-109
> Ahg906183 jgi|Araly1|906183|Al_scaffold_0003_3311
Length=486
Score = 527 bits (285), Expect = 5e-149
Identities = 419/483 (87%), Gaps = 12/483 (2%)
Strand=Plus/Plus
Query 44 ACTGGCTATTCTCG-ATTTTTAATCGTCTTTGTAGCTCTTGTAGGTGCTCTTGTTCTTCC 102
||| |||||||||| | || |||| |||| | || |||||||||||||||||| ||||
Sbjct 10 ACTAGCTATTCTCGCA-TTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTTGTTGTTCC 68
Query 103 CTCGAAAGCTCAAGATAGCCCA-CAAGATTATCTAAGGGTTCACAACCAGGCACGAGGAG 161
|||||| |||||||| || ||| ||||| ||| ||| | ||||||||||||||| | |
Sbjct 69 CTCGAAGGCTCAAGACAG-CCAGCAAGACTATGTAAATGCTCACAACCAGGCACG-GTCG 126
Query 162 C-GGTAGGCGTAGGTCCCATGCAGTGGGACGAGAGGGTTGCAGCCTATGCTCGGAGCTAC 220
| |||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 127 CAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGGAGCTAC 186
Query 221 GCAGAACAA-CTAAGAGGCAACTGCAGACTCATACACTCTGGTGGGCCTTACGGGGAAAA 279
|||| | || |||| |||| ||||||||||| |||| || ||||||||||||||||| ||
Sbjct 187 GCAG-AGAACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGGGGAGAA 245
Query 280 CTTAGCCTGG-GGTAGCGGTGACTTGTCTGGCGTCTCCGCCGTGAACATGTGGGTTAGCG 338
||| ||| || ||||||||||||| ||||||||| | || |||||| ||||||||| ||
Sbjct 246 CTTGGCC-GGTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGGTTAACG 304
Query 339 AGAAGGCTAACTACAACTACGCTGCGAACACGTGCAATGGAGTTTGTGGTCACTACACTC 398
|||||||||||||||||||| | | ||||||||||| |||||||| |||||||||||||
Sbjct 305 AGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACTACACTC 364
Query 399 AAGTTGTTTGGAGAAAGTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTG 458
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTG 424
Query 459 GAACCATAATCAGTTGCAACTATGATCCTC-GTGGGAATTATGTGAACGAGAAGCCATAC 517
||||||| || |||||||| ||| |||||| | ||||| |||| |||| ||||||| |||
Sbjct 425 GAACCATCATTAGTTGCAATTATAATCCTCCG-GGGAACTATGCGAACCAGAAGCCTTAC 483
Query 518 TAA 520
|||
Sbjct 484 TAA 486
> Ahg931178 jgi|Araly1|931178|scaffold_303635.1
Length=322
Score = 394 bits (213), Expect = 5e-109
Identities = 245/261 (94%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16 CCATTATCAACTTAGAAAAATGAATTTTACTGGCTATTCTCGATTTTTAATCGTCTTTGT 75
|||||||| |||||||||||||||||| | | |||||||||||||| |||| || |||||
Sbjct 2 CCATTATCGACTTAGAAAAATGAATTTCATTAGCTATTCTCGATTTCTAATAGTTTTTGT 61
Query 76 AGCTCTTGTAGGTGCTCTTGTTCTTCCCTCGAAAGCTCAAGATAGCCCACAAGATTATCT 135
||| |||||||| ||||||||||||||| |||| |||||||| ||||||||||| |||||
Sbjct 62 AGCCCTTGTAGGAGCTCTTGTTCTTCCCACGAAGGCTCAAGACAGCCCACAAGACTATCT 121
Query 136 AAGGGTTCACAACCAGGCACGAGGAGCGGTAGGCGTAGGTCCCATGCAGTGGGACGAGAG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAGGGTTCACAACCAGGCACGAGGAGCGGTAGGCGTAGGTCCCATGCAGTGGGACGAGAG 181
Query 196 GGTTGCAGCCTATGCTCGGAGCTACGCAGAACAACTAAGAGGCAACTGCAGACTCATACA 255
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 182 GGTTGCAGCCTACGCTCGGAGCTACGCAGAACAACTAAGAGGCAACTGCAGACTCGTACA 241
Query 256 CTCTGGTGGGCCTTACGGGGA 276
||| |||||||||||||||||
Sbjct 242 CTCGGGTGGGCCTTACGGGGA 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28020343995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5