BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14620.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480350 jgi|Araly1|480350|fgenesh2_kg.3__3051__AT2G14620.1 1555 0.0
> Ahg480350 jgi|Araly1|480350|fgenesh2_kg.3__3051__AT2G14620.1
Length=1098
Score = 1555 bits (842), Expect = 0.0
Identities = 963/1022 (94%), Gaps = 6/1022 (1%)
Strand=Plus/Plus
Query 1 ATAGGACACAATTTACTTTAAACACTTTTCATGCAATACAATATGTATATATACTAATCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATAGGACACAATTTACTTTAAACACTTTTCATGCAATACAATATGTATATATACTGATCA 60
Query 61 ATGATCGTTATATATGTCCATCGTACTCAA-CCTCAAACATCTTAAATAATGACTCTAAT 119
|||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 61 ATGATCGTCATATATGTCCAACGTACTCAACCCTCAAACATCTTAAATAATGACTATAAT 120
Query 120 AAATCGCTCAAAACCATTTGTACTTCTCGTAGGCTTCTCAATTATCTCAAGTTTGCTATT 179
|||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||
Sbjct 121 AAATCGCTCAAAACCATTTGTACTTCTCATAGGATTCT---TTAGCTCAAGTTTGCTATT 177
Query 180 ATGGGTCTCACAAGCTTCCGTTGTTTCATCAGGAGATTTTAACAAAGACTTCTTTGTGAC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 ATGGGTCTCACAAGCTTCCGTTGTTTCATCAGGAGATTTTAACAAAGACTTCTTCGTGAC 237
Query 240 ATGGTCTCCTACCCACGTTAACACCTCCAATGATGGTCGATCAAGAACCCTTAAACTCGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 ATGGTCTCCTACCCACGTTAACACCTCCAATGATGGTCGATCAAGAACCCTTAAGCTCGA 297
Query 300 TCAAGAATCTGGAGCTTCTTTTTCTTCCATTCAGACGTTCTTGTTCGGCCAAATAGATAT 359
|||||||||||||||||||||||||||||| || | ||||||||| || |||||||||||
Sbjct 298 TCAAGAATCTGGAGCTTCTTTTTCTTCCATACATAGGTTCTTGTTTGGGCAAATAGATAT 357
Query 360 GAAGATCAAACTTAT-CCGTGGAAGTTCTCAAGGAACCGTGGTTGCTTATTATATGTCCT 418
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 358 GAAGATCAAACTTATACCG-GGAAGTTCTCAAGGAACCGTGGTTGCTTATTATATGTCTT 416
Query 419 CAGATCAGCCTAACCGGGATGAGATTGACTTTGAGTTCCTCGGAAACGTTAATGGGCAGC 478
|| ||||||| ||||||||||||||||||||||| ||| | ||||||||||| || ||||
Sbjct 417 CAAATCAGCCAAACCGGGATGAGATTGACTTTGAATTCTTGGGAAACGTTAACGGACAGC 476
Query 479 CTTACATTCTCCAGACAAATGTCTATGCCGAGGGACTTGATAACCGCGAAGAAAGGATCC 538
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 477 CTTACATTCTCCAAACAAATGTCTATGCCGATGGAATTGATAACCGCGAAGAAAGGATCC 536
Query 539 ATCTCTGGTTCGACCCAGCCAAGGACTTTCACACTTACTCTATCTTGTGGAACATTCACC 598
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATCTCTGGTTCGACCCAACCAAGGACTTTCACACTTACTCTATCTTGTGGAACATTCACC 596
Query 599 AAATTGTATTTATGGTGGATCAGATTCCGATAAGGTTGTATAGAAACCATGGGGAGAAAG 658
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 597 AAATTGTATTTATGGTGGATCAGATTCCGATAAGATTGTATAGAAACCACGCGGAGAAAG 656
Query 659 GCGTAGCCTACCCAAGGTTGCAACCTATGAGTGTACAGGCGAGTCTATGGAACGGTGAGA 718
||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 657 GCGTAGCCTACCCAAGGCTGGAACCTATGAGTGTACAGACGAGCCTATGGAACGGTGAGA 716
Query 719 GCTGGGCTACGCGCGGTGGACATGACAAGATTGATTGGTCAAAGGGTCCATTTGTGGCTT 778
|||||||||| |||||||| | |||||||||||| ||| |||||||||||||||||||||
Sbjct 717 GCTGGGCTACACGCGGTGGGCGTGACAAGATTGACTGGGCAAAGGGTCCATTTGTGGCTT 776
Query 779 CCTTTGGGGATTACAAGATAGACGCTTGTATTTGGATAGGCAATACAAGTTTTTGTAATG 838
|||||||||||||||||||||| | |||| |||||| ||||||| ||| |||||||||||
Sbjct 777 CCTTTGGGGATTACAAGATAGATGGTTGTGTTTGGAAAGGCAATCCAATTTTTTGTAATG 836
Query 839 GAGAGAGCACTGAAAACTGGTGGAACAAGAATGAGTTCAGTTCTTTGACAAGAGTGCAAA 898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAGAGAGCAATGAAAACTGGTGGAACAAGAATGAGTTCAGTTCTTTGACAAGAGTGCAAA 896
Query 899 AGAGATGGTTTAAATGGGTGAGAAAATATCACTTGATTTATGATTATTGCCAAGATTATG 958
|||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||
Sbjct 897 AGAGATGGTTTAAATGGGTGAGGAAGTATCACTTAATTTATGATTATTGCCAAGATAATG 956
Query 959 GAAGGTTCAATAACAAGCTACCGAAGGAATGTTCTCTTCCTAAATATTGAATTTGCTCAA 1018
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 957 GAAGGTTCAATAACAAGCTGCCCAAGGAATGTTCTCTTCCAAAATATTGAATTTGCTCCA 1016
Query 1019 AT 1020
||
Sbjct 1017 AT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5