BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G14660.1
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319455 jgi|Araly1|319455|fgenesh1_pm.C_scaffold_3002471 664 0.0
> Ahg319455 jgi|Araly1|319455|fgenesh1_pm.C_scaffold_3002471
Length=468
Score = 664 bits (359), Expect = 0.0
Identities = 438/474 (92%), Gaps = 14/474 (3%)
Strand=Plus/Plus
Query 16 ATGGGGAAAACGAAGCGATACTGGTTACTGAAAACAGAGCCAAATGAGTGGTCATGGTCA 75
||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1 ATGGGAAAAACGAAGCAATACTGGTTACTCAAAACAGAGCCAAGTGAGTGGTCATGGTCA 60
Query 76 GACCAAGAATCAAACGGCGGTATCAGCAAATGGGACGGCGTCAAGAACAAACAAGCCCAG 135
||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GACCAAGAAGCAAACGGCGGGATCAGCAAATGGGACGGTGTCAAGAACAAACAAGCCCAG 120
Query 136 AAGAATCTTAAA-TCCATGACTTTAGGAGATCTCTGTTTCTTCTACCATTCAGGAACCAA 194
||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AAGAATC-TAAAGTCCATGACTTTAGGAGATCTCTGTTTCTTCTACCACTCAGGAACCAA 179
Query 195 ATCAAGATGCGTCGTTGGCGTGGTTGAAGTATCACGTGAATGGTACACTGATGATGCTGA 254
| | ||||||||||||||||| ||||||||||| |||||||||||||||||| ||| |
Sbjct 180 AGCTAGATGCGTCGTTGGCGTAGTTGAAGTATCGCGTGAATGGTACACTGATAATG---A 236
Query 255 AGGAGTAGAAGGAGAAGGAGCGGTTGATGTCAAAGCGATTGGAGAAATGAGGAAATGTGT 314
| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 237 -----T-GAAGGAGAAGGAGCGGTTGATGTTAAAGCGGTTGGAGAGATGAGGAAATGTGT 290
Query 315 GGATTTGAAGGAAATGAAAGGAGACAAAGGGATTATTACTAAAGGTTTTGTTTTGTTTAG 374
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 291 GGATTTGAAGGAAATGAAAGGAGACAAAGGGATTATTA--AG-GGTTTTGTTTTGTTTAG 347
Query 375 ACAGCCGAGGTTGTCTGTTGTTCCTGTTGAGGAAGATGTTTGGAATATGATTTGTGAATT 434
||| ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||
Sbjct 348 ACAACCGAGGTTGTCTGTTGTTCCTGTGGAGGAAGATGTCTGGAAAAAGATTTGTGAATT 407
Query 435 GGGAAATGGGTTTTGTGGAGATGGTAAGGAAGATTGTGAAAGTAGTGATGATGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GGGAAATGGGTTTTGTGGAGATGGTAAGGAAGATTGTGAAAGTAGTGATGATGA 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21710530141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5